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Getting 'Biological Unit' information from database.
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3KJ0
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
MCL-1 IN COMPLEX WITH BIM BH3 MUTANT I2DY
Authors
:
E. Fire, R. A. Grant, A. E. Keating
Date
:
02 Nov 09 (Deposition) - 16 Feb 10 (Release) - 23 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bcl-2, Bh3, Apoptosis, Protein-Peptide Complex, Alternative Splicing, Cytoplasm, Developmental Protein, Differentiation, Isopeptide Bond, Membrane, Mitochondrion, Nucleus, Phosphoprotein, Polymorphism, Transmembrane, Ubl Conjugation
(Keyword Search:
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Reference
:
E. Fire, S. V. Gulla, R. A. Grant, A. E. Keating
Mcl-1-Bim Complexes Accommodate Surprising Point Mutations Via Minor Structural Changes.
Protein Sci. V. 19 507 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:121 , GLU A:173 , LEU A:174 , GLN A:177 , SER A:202 , GLU B:16 , ALA B:19 , TYR B:20 , HOH B:37 , HOH B:98
BINDING SITE FOR RESIDUE TRS B 7359
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024021 (E173D, chain A, )
2: VAR_024022 (A227V, chain A, )
3: VAR_054157 (M231L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024021
E
173
D
MCL1_HUMAN
Polymorphism
2737820
A
E
173
D
2
UniProt
VAR_024022
A
227
V
MCL1_HUMAN
Polymorphism
11580946
A
A
227
V
3
UniProt
VAR_054157
M
231
L
MCL1_HUMAN
Polymorphism
---
A
M
231
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: BH3 (A:209-223)
2: BCL2_FAMILY (A:213-314)
3: BH1 (A:253-272)
4: BH2 (A:305-316)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
MCL1_HUMAN
209-223
1
A:209-223
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
MCL1_HUMAN
213-314
1
A:213-314
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
MCL1_HUMAN
253-272
1
A:253-272
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
MCL1_HUMAN
305-316
1
A:305-316
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:170-230 (gaps))
Exon 1.2b (A:230-312)
Exon 1.3d (A:313-326)
Exon 2.10b (B:0-23)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3d
4: Boundary 1.3d/-
5: Boundary 2.4d/2.10b
6: Boundary 2.10b/2.14f
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369026
1a
ENSE00001152267
chr1:
150552066-150551319
748
MCL1_HUMAN
1-230
230
1
A:170-230 (gaps)
73
1.2b
ENST00000369026
2b
ENSE00000959746
chr1:
150550967-150550720
248
MCL1_HUMAN
230-312
83
1
A:230-312
83
1.3d
ENST00000369026
3d
ENSE00001696123
chr1:
150549967-150547032
2936
MCL1_HUMAN
313-350
38
1
A:313-326
14
2.2b
ENST00000393256
2b
ENSE00001830376
chr2:
111878506-111878765
260
B2L11_HUMAN
-
0
0
-
-
2.4d
ENST00000393256
4d
ENSE00001008808
chr2:
111881310-111881716
407
B2L11_HUMAN
1-132
132
0
-
-
2.10b
ENST00000393256
10b
ENSE00001756661
chr2:
111907621-111907724
104
B2L11_HUMAN
132-166
35
1
B:0-23
24
2.14f
ENST00000393256
14f
ENSE00001924953
chr2:
111921710-111924587
2878
B2L11_HUMAN
167-198
32
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kj0a_ (A:)
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(
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
automated matches
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3kj0a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Bcl_2_3kj0A01 (A:213-312)
2a: PFAM_Bclx_interact_3kj0B01 (B:1-23)
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Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-3kj0A01
A:213-312
Clan
:
no clan defined [family: Bclx_interact]
(9)
Family
:
Bclx_interact
(9)
Homo sapiens (Human)
(8)
2a
Bclx_interact-3kj0B01
B:1-23
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