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3KIV
Asym. Unit
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Asym.Unit (20 KB)
Biol.Unit 1 (16 KB)
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(1)
Title
:
RECOMBINANT KRINGLE IV-10/M66 VARIANT OF HUMAN APOLIPOPROTEIN(A)
Authors
:
I. Mochalkin, A. Tulinsky, A. Scanu
Date
:
08 Sep 98 (Deposition) - 18 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kringle, Lysine Binding Site, Apolipoprotein(A)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mochalkin, B. Cheng, O. Klezovitch, A. M. Scanu, A. Tulinsky
Recombinant Kringle Iv-10 Modules Of Human Apolipoprotein(A): Structure, Ligand Binding Modes, And Biological Relevance.
Biochemistry V. 38 1990 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 6-AMINOHEXANOIC ACID (ACAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACA
1
Ligand/Ion
6-AMINOHEXANOIC ACID
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: LBS (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:32 , ARG A:35 , ASP A:55 , ASP A:57 , TRP A:62 , PHE A:64 , ARG A:71 , TRP A:72 , HOH A:232 , HOH A:235
BINDING SITE FOR RESIDUE ACA A 100
2
LBS
UNKNOWN
ARG A:35 , ASP A:55 , ASP A:57 , TRP A:62 , ARG A:71 , TRP A:72
LYSINE BINDING SITE
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047299 (T66T, chain A, )
2: VAR_006633 (W72R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047299
M
4187
T
APOA_HUMAN
Polymorphism
1801693
A
T
66
T
2
UniProt
VAR_006633
W
4193
R
APOA_HUMAN
Unclassified
---
A
W
72
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_2 (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
2: KRINGLE_1 (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_2
PS50070
Kringle domain profile.
APOA_HUMAN
27-105
141-219
255-333
369-447
483-561
597-675
711-789
825-903
939-1017
1053-1131
1167-1245
1281-1359
1395-1473
1509-1587
1623-1701
1737-1815
1851-1929
1965-2043
2079-2157
2193-2271
2307-2385
2421-2499
2535-2613
2649-2727
2763-2841
2877-2955
2991-3069
3105-3183
3219-3297
3333-3411
3447-3525
3561-3639
3675-3753
3781-3859
3895-3973
4009-4087
4123-4201
4227-4307
1
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-
-
A:0-80
-
2
KRINGLE_1
PS00021
Kringle domain signature.
APOA_HUMAN
76-88
190-202
304-316
418-430
532-544
646-658
760-772
874-886
988-1000
1102-1114
1216-1228
1330-1342
1444-1456
1558-1570
1672-1684
1786-1798
1900-1912
2014-2026
2128-2140
2242-2254
2356-2368
2470-2482
2584-2596
2698-2710
2812-2824
2926-2938
3040-3052
3154-3166
3268-3280
3382-3394
3496-3508
3610-3622
3724-3736
3830-3842
3944-3956
4058-4070
4172-4184
4277-4290
1
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-
-
A:50-63
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kiva_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Apolipoprotein A
(5)
Human (Homo sapiens), IV-10/M66 variant [TaxId: 9606]
(3)
1a
d3kiva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3kivA00 (A:0-80)
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(
)
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(
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Topologies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
3kivA00
A:0-80
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Kringle_3kivA01 (A:1-80)
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Clans
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Families
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(
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Organisms
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(
)
Clan
:
no clan defined [family: Kringle]
(26)
Family
:
Kringle
(26)
Homo sapiens (Human)
(19)
1a
Kringle-3kivA01
A:1-80
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Chain A
Asymmetric Unit 1
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