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3KII
Biol. Unit 1
Info
Asym.Unit (226 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
AGAO 5-PHENOXY-2,3-PENTADIENYLAMINE COMPLEX
Authors
:
Y. H. Nguyen, K. E. Ernberg, J. M. Guss
Date
:
02 Nov 09 (Deposition) - 27 Oct 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cuao, Amine Oxidase, Arthrobacter Globiformis, Copper Containing, Metal-Binding, Oxidoreductase, Tpq, Quinone, Inhibition, 5-Phenoxy- 2, 3-Pentadienylamine, Disulfide Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. H. Nguyen, K. E. Ernberg, J. M. Guss
Agao 5-Phenoxy-2, 3-Pentadienylamine Complex
To Be Published
[
close entry info
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: 2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-P... (P2Qa)
4b: 2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-P... (P2Qb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
P2Q
2
Mod. Amino Acid
2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-PHENOXYBUT-2-EN-1YL]AMINO}-L-TYROSINE
5
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:780
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:687
BINDING SITE FOR RESIDUE NA A 702
03
AC3
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , HOH A:925 , HIS B:515 , LYS B:610 , ARG B:612
BINDING SITE FOR RESIDUE SO4 A 649
04
AC4
SOFTWARE
GLU A:347 , ARG A:370 , LYS A:401 , GOL A:653 , HOH A:833 , HOH A:913 , HOH A:1017 , TRP B:349 , SO4 B:650
BINDING SITE FOR RESIDUE GOL A 650
05
AC5
SOFTWARE
ARG A:619 , SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , THR B:210
BINDING SITE FOR RESIDUE GOL A 651
06
AC6
SOFTWARE
GLN A:519 , PRO A:520 , THR A:591 , PHE A:593 , HOH A:757 , HOH A:1037 , GLY B:492 , LYS B:513 , HIS B:515 , HOH B:754 , HOH B:849
BINDING SITE FOR RESIDUE GOL A 652
07
AC7
SOFTWARE
TRP A:349 , ARG A:370 , TYR A:389 , GLU A:397 , GLU A:399 , GOL A:650 , HOH A:978 , GOL B:657
BINDING SITE FOR RESIDUE GOL A 653
08
AC8
SOFTWARE
HIS B:431 , HIS B:433 , HIS B:592 , HOH B:659
BINDING SITE FOR RESIDUE CU B 701
09
AC9
SOFTWARE
ASP B:440 , MET B:441 , ASP B:581 , ILE B:582 , HOH B:839
BINDING SITE FOR RESIDUE NA B 702
10
BC1
SOFTWARE
GLY A:350 , ARG A:367 , ASP B:316 , CYS B:317 , LEU B:318 , GOL B:656 , HOH B:757 , HOH B:866 , HOH B:946 , HOH B:1113 , HOH B:1114
BINDING SITE FOR RESIDUE SO4 B 649
11
BC2
SOFTWARE
ASP A:316 , LEU A:318 , TYR A:387 , GOL A:650 , HOH A:736 , HOH A:908 , HOH A:943 , GLY B:350 , ARG B:367 , HOH B:759
BINDING SITE FOR RESIDUE SO4 B 650
12
BC3
SOFTWARE
HIS A:515 , LYS A:610 , ARG A:612 , LEU B:590 , ASP B:605 , THR B:606 , HOH B:985
BINDING SITE FOR RESIDUE SO4 B 651
13
BC4
SOFTWARE
ASP B:444 , GLY B:445 , PHE B:446 , THR B:447 , ASN B:499
BINDING SITE FOR RESIDUE GOL B 652
14
BC5
SOFTWARE
LEU A:209 , THR A:210 , ARG B:619 , SER B:620 , PRO B:621 , VAL B:622 , LEU B:623 , ASP B:624
BINDING SITE FOR RESIDUE GOL B 653
15
BC6
SOFTWARE
ARG B:532 , ARG B:533 , THR B:554 , PHE B:557 , HIS B:561 , SER B:562 , GLY B:563 , GLY B:564 , ALA B:565 , HOH B:809
BINDING SITE FOR RESIDUE GOL B 654
16
BC7
SOFTWARE
ASN B:126 , VAL B:159 , ASP B:161 , HIS B:170 , VAL B:197 , ALA B:199 , HOH B:679 , HOH B:948
BINDING SITE FOR RESIDUE GOL B 655
17
BC8
SOFTWARE
ASP A:348 , TRP A:349 , HOH A:1008 , HOH A:1017 , GLU B:347 , ARG B:370 , LYS B:401 , SO4 B:649 , GOL B:657 , HOH B:928 , HOH B:989
BINDING SITE FOR RESIDUE GOL B 656
18
BC9
SOFTWARE
GOL A:653 , TRP B:349 , ARG B:370 , TYR B:389 , GLU B:397 , GLU B:399 , GOL B:656 , HOH B:692 , HOH B:1115
BINDING SITE FOR RESIDUE GOL B 657
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_3kiiB01 (B:98-198)
1b: PFAM_Cu_amine_oxidN3_3kiiB02 (B:98-198)
2a: PFAM_Cu_amine_oxid_3kiiB03 (B:219-628)
2b: PFAM_Cu_amine_oxid_3kiiB04 (B:219-628)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-3kiiB01
B:98-198
1b
Cu_amine_oxidN3-3kiiB02
B:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-3kiiB03
B:219-628
2b
Cu_amine_oxid-3kiiB04
B:219-628
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Asymmetric Unit 1
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