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3KII
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
AGAO 5-PHENOXY-2,3-PENTADIENYLAMINE COMPLEX
Authors
:
Y. H. Nguyen, K. E. Ernberg, J. M. Guss
Date
:
02 Nov 09 (Deposition) - 27 Oct 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cuao, Amine Oxidase, Arthrobacter Globiformis, Copper Containing, Metal-Binding, Oxidoreductase, Tpq, Quinone, Inhibition, 5-Phenoxy- 2, 3-Pentadienylamine, Disulfide Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. H. Nguyen, K. E. Ernberg, J. M. Guss
Agao 5-Phenoxy-2, 3-Pentadienylamine Complex
To Be Published
[
close entry info
]
Hetero Components
(5, 20)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: 2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-P... (P2Qa)
4b: 2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-P... (P2Qb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
P2Q
2
Mod. Amino Acid
2-HYDROXY-5-{[(1S,2E)-1-FORMYL-4-PHENOXYBUT-2-EN-1YL]AMINO}-L-TYROSINE
5
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:780
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:687
BINDING SITE FOR RESIDUE NA A 702
03
AC3
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , HOH A:925 , HIS B:515 , LYS B:610 , ARG B:612
BINDING SITE FOR RESIDUE SO4 A 649
04
AC4
SOFTWARE
GLU A:347 , ARG A:370 , LYS A:401 , GOL A:653 , HOH A:833 , HOH A:913 , HOH A:1017 , TRP B:349 , SO4 B:650
BINDING SITE FOR RESIDUE GOL A 650
05
AC5
SOFTWARE
ARG A:619 , SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , THR B:210
BINDING SITE FOR RESIDUE GOL A 651
06
AC6
SOFTWARE
GLN A:519 , PRO A:520 , THR A:591 , PHE A:593 , HOH A:757 , HOH A:1037 , GLY B:492 , LYS B:513 , HIS B:515 , HOH B:754 , HOH B:849
BINDING SITE FOR RESIDUE GOL A 652
07
AC7
SOFTWARE
TRP A:349 , ARG A:370 , TYR A:389 , GLU A:397 , GLU A:399 , GOL A:650 , HOH A:978 , GOL B:657
BINDING SITE FOR RESIDUE GOL A 653
08
AC8
SOFTWARE
HIS B:431 , HIS B:433 , HIS B:592 , HOH B:659
BINDING SITE FOR RESIDUE CU B 701
09
AC9
SOFTWARE
ASP B:440 , MET B:441 , ASP B:581 , ILE B:582 , HOH B:839
BINDING SITE FOR RESIDUE NA B 702
10
BC1
SOFTWARE
GLY A:350 , ARG A:367 , ASP B:316 , CYS B:317 , LEU B:318 , GOL B:656 , HOH B:757 , HOH B:866 , HOH B:946 , HOH B:1113 , HOH B:1114
BINDING SITE FOR RESIDUE SO4 B 649
11
BC2
SOFTWARE
ASP A:316 , LEU A:318 , TYR A:387 , GOL A:650 , HOH A:736 , HOH A:908 , HOH A:943 , GLY B:350 , ARG B:367 , HOH B:759
BINDING SITE FOR RESIDUE SO4 B 650
12
BC3
SOFTWARE
HIS A:515 , LYS A:610 , ARG A:612 , LEU B:590 , ASP B:605 , THR B:606 , HOH B:985
BINDING SITE FOR RESIDUE SO4 B 651
13
BC4
SOFTWARE
ASP B:444 , GLY B:445 , PHE B:446 , THR B:447 , ASN B:499
BINDING SITE FOR RESIDUE GOL B 652
14
BC5
SOFTWARE
LEU A:209 , THR A:210 , ARG B:619 , SER B:620 , PRO B:621 , VAL B:622 , LEU B:623 , ASP B:624
BINDING SITE FOR RESIDUE GOL B 653
15
BC6
SOFTWARE
ARG B:532 , ARG B:533 , THR B:554 , PHE B:557 , HIS B:561 , SER B:562 , GLY B:563 , GLY B:564 , ALA B:565 , HOH B:809
BINDING SITE FOR RESIDUE GOL B 654
16
BC7
SOFTWARE
ASN B:126 , VAL B:159 , ASP B:161 , HIS B:170 , VAL B:197 , ALA B:199 , HOH B:679 , HOH B:948
BINDING SITE FOR RESIDUE GOL B 655
17
BC8
SOFTWARE
ASP A:348 , TRP A:349 , HOH A:1008 , HOH A:1017 , GLU B:347 , ARG B:370 , LYS B:401 , SO4 B:649 , GOL B:657 , HOH B:928 , HOH B:989
BINDING SITE FOR RESIDUE GOL B 656
18
BC9
SOFTWARE
GOL A:653 , TRP B:349 , ARG B:370 , TYR B:389 , GLU B:397 , GLU B:399 , GOL B:656 , HOH B:692 , HOH B:1115
BINDING SITE FOR RESIDUE GOL B 657
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_3kiiB01 (B:98-198)
1b: PFAM_Cu_amine_oxidN3_3kiiB02 (B:98-198)
2a: PFAM_Cu_amine_oxid_3kiiB03 (B:219-628)
2b: PFAM_Cu_amine_oxid_3kiiB04 (B:219-628)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-3kiiB01
B:98-198
1b
Cu_amine_oxidN3-3kiiB02
B:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-3kiiB03
B:219-628
2b
Cu_amine_oxid-3kiiB04
B:219-628
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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