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3KH2
Asym. Unit
Info
Asym.Unit (272 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (130 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE P1 BACTERIOPHAGE DOC TOXIN (F68S) IN COMPLEX WITH THE PHD ANTITOXIN (L17M/V39A). NORTHEAST STRUCTURAL GENOMICS TARGETS ER385-ER386
Authors
:
M. A. Arbing, A. P. Kuzin, M. Su, M. Abashidze, G. Verdon, M. Liu, R. Xiao, M. Inouye, G. T. Montelione, N. A. Woychik, J. F. Hunt, Northeast Stru Genomics Consortium (Nesg)
Date
:
29 Oct 09 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Toxin, Antitoxin, Structural Genomics, Psi-2, Northeast Structural Genomics Consortium (Nesg), Protein Structure Initiative
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Arbing, S. K. Handelman, A. P. Kuzin, G. Verdon, C. Wang, M. Su, F. P. Rothenbacher, M. Abashidze, M. Liu, J. M. Hurley, R. Xiao, T. Acton, M. Inouye, G. T. Montelione, N. A. Woychik, J. F. Hunt
Crystal Structures Of Phd-Doc, Higa, And Yeeu Establish Multiple Evolutionary Links Between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure V. 18 996 2010
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: 2-HYDROXYETHYL DISULFIDE (HEDa)
3b: 2-HYDROXYETHYL DISULFIDE (HEDb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
HED
2
Ligand/Ion
2-HYDROXYETHYL DISULFIDE
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
5
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:71 , LYS A:73 , ARG A:74
BINDING SITE FOR RESIDUE CL A 1001
2
AC2
SOFTWARE
TYR B:45 , ARG C:64 , GLU D:47
BINDING SITE FOR RESIDUE GOL B 2001
3
AC3
SOFTWARE
ARG A:42 , TYR A:45 , GLU A:46 , ARG D:38 , ARG D:42
BINDING SITE FOR RESIDUE HED A 1002
4
AC4
SOFTWARE
ARG B:38 , ARG B:42 , VAL B:111 , ARG C:38 , ARG C:42
BINDING SITE FOR RESIDUE HED B 1001
5
AC5
SOFTWARE
GLN E:2 , GLU E:25 , VAL E:26 , GLU E:27 , VAL E:37
BINDING SITE FOR RESIDUE PO4 E 4003
6
AC6
SOFTWARE
GLN F:2 , GLU F:25 , VAL F:26 , GLU F:27 , VAL F:37
BINDING SITE FOR RESIDUE PO4 F 4001
7
AC7
SOFTWARE
GLN G:2 , GLU G:25 , VAL G:26 , GLU G:27 , GLU H:45
BINDING SITE FOR RESIDUE PO4 G 4002
8
AC8
SOFTWARE
ASP H:53
BINDING SITE FOR RESIDUE GOL H 2003
9
AC9
SOFTWARE
GLN H:2 , GLU H:25 , VAL H:26 , GLU H:27
BINDING SITE FOR RESIDUE PO4 H 4004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FIDO (A:4-120,B:4-120,C:4-120,D:4-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIDO
PS51459
Fido domain profile.
DOC_BPP1
4-120
4
A:4-120
B:4-120
C:4-120
D:4-120
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_PhdYeFM_antitox_3kh2H01 (H:2-73)
1b: PFAM_PhdYeFM_antitox_3kh2H02 (H:2-73)
1c: PFAM_PhdYeFM_antitox_3kh2H03 (H:2-73)
1d: PFAM_PhdYeFM_antitox_3kh2H04 (H:2-73)
2a: PFAM_Fic_3kh2D01 (D:3-84)
2b: PFAM_Fic_3kh2D02 (D:3-84)
2c: PFAM_Fic_3kh2D03 (D:3-84)
2d: PFAM_Fic_3kh2D04 (D:3-84)
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Clans
(
)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Plasmid_toxin
(9)
Family
:
PhdYeFM_antitox
(4)
Enterobacteria phage P1 (Bacteriophage P1)
(2)
1a
PhdYeFM_antitox-3kh2H01
H:2-73
1b
PhdYeFM_antitox-3kh2H02
H:2-73
1c
PhdYeFM_antitox-3kh2H03
H:2-73
1d
PhdYeFM_antitox-3kh2H04
H:2-73
Clan
:
no clan defined [family: Fic]
(3)
Family
:
Fic
(3)
Enterobacteria phage P1 (Bacteriophage P1)
(2)
2a
Fic-3kh2D01
D:3-84
2b
Fic-3kh2D02
D:3-84
2c
Fic-3kh2D03
D:3-84
2d
Fic-3kh2D04
D:3-84
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (272 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (130 KB)
Header - Biol.Unit 2
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