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3KGX
Asym. Unit
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Asym.Unit (140 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (AAH25799.1) FROM MUS MUSCULUS AT 1.80 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Oct 09 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Putative Aminotransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Aminotransferase (Aah25799. 1) From Mus Musculus At 1. 80 A Resolution
To Be Published
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:54 , LEU A:55 , HOH A:789 , MET B:67
BINDING SITE FOR RESIDUE CL A 502
02
AC2
SOFTWARE
HIS A:319 , HIS A:323 , ASP A:396 , HOH A:678 , HOH A:679
BINDING SITE FOR RESIDUE MG A 503
03
AC3
SOFTWARE
GLU A:315 , THR A:392 , HOH A:700 , HOH A:744 , ARG B:403 , HOH B:740
BINDING SITE FOR RESIDUE EDO A 504
04
AC4
SOFTWARE
PHE A:113 , LEU A:116 , GLU A:117 , PRO A:118 , ILE A:141 , ARG A:255 , PRO A:259 , VAL A:260
BINDING SITE FOR RESIDUE EDO A 505
05
AC5
SOFTWARE
ARG A:93 , PRO A:95 , VAL A:145 , ASP A:246 , HOH A:603 , HOH A:626 , HOH A:813
BINDING SITE FOR RESIDUE EDO A 507
06
AC6
SOFTWARE
PRO A:187 , LEU A:188 , ASP A:189 , HOH A:628 , HOH A:801 , HOH A:820
BINDING SITE FOR RESIDUE EDO A 508
07
AC7
SOFTWARE
GLU A:109 , GLU B:109 , HOH B:665
BINDING SITE FOR RESIDUE EDO A 510
08
AC8
SOFTWARE
GLY A:190 , HOH A:672 , HOH A:681 , ARG B:255
BINDING SITE FOR RESIDUE EDO A 511
09
AC9
SOFTWARE
ARG A:66 , MET A:67 , ASN B:54 , LEU B:55 , HOH B:768
BINDING SITE FOR RESIDUE CL B 501
10
BC1
SOFTWARE
PHE B:113 , LEU B:116 , GLU B:117 , ILE B:141 , ARG B:255 , PRO B:259 , VAL B:260
BINDING SITE FOR RESIDUE EDO B 506
11
BC2
SOFTWARE
ILE B:129 , ARG B:133 , HOH B:671
BINDING SITE FOR RESIDUE EDO B 509
12
BC3
SOFTWARE
LEU B:188 , ASP B:189 , HOH B:620 , HOH B:758 , HOH B:814
BINDING SITE FOR RESIDUE EDO B 512
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_5 (A:222-242,B:222-242)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_5
PS00595
Aminotransferases class-V pyridoxal-phosphate attachment site.
SPYA_MOUSE
222-242
2
A:222-242
B:222-242
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3kgxa_ (A:)
1b: SCOP_d3kgxb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Cystathionine synthase-like
(64)
Protein domain
:
automated matches
(14)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d3kgxa_
A:
1b
d3kgxb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3kgxB02 (B:56-304)
1b: CATH_3kgxA02 (A:56-304)
2a: CATH_3kgxA01 (A:27-55,A:305-412)
2b: CATH_3kgxB01 (B:23-55,B:305-412)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Mouse (Mus musculus)
(3)
1a
3kgxB02
B:56-304
1b
3kgxA02
A:56-304
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Mouse (Mus musculus)
(2)
2a
3kgxA01
A:27-55,A:305-412
2b
3kgxB01
B:23-55,B:305-412
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aminotran_5_3kgxB01 (B:46-397)
1b: PFAM_Aminotran_5_3kgxB02 (B:46-397)
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)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_5
(20)
Mus musculus (Mouse)
(2)
1a
Aminotran_5-3kgxB01
B:46-397
1b
Aminotran_5-3kgxB02
B:46-397
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Asymmetric Unit 1
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Asym.Unit (140 KB)
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