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3KG2
Asym. Unit
Info
Asym.Unit (977 KB)
Biol.Unit 1 (963 KB)
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(1)
Title
:
AMPA SUBTYPE IONOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH COMPETITIVE ANTAGONIST ZK 200775
Authors
:
A. I. Sobolevsky, M. P. Rosconi, E. Gouaux
Date
:
28 Oct 09 (Deposition) - 08 Dec 09 (Release) - 27 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ion Channel, Membrane Protein, Cell Membrane, Glycoprotein, Ion Transport, Membrane, Postsynaptic Cell Membrane, Receptor, Rna Editing, Synapse, Transmembrane, Transport, Tetramer, Transport Protein
(Keyword Search:
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Reference
:
A. I. Sobolevsky, M. P. Rosconi, E. Gouaux
X-Ray Structure, Symmetry And Mechanism Of An Ampa-Subtype Glutamate Receptor.
Nature V. 462 745 2009
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3a: {[7-MORPHOLIN-4-YL-2,3-DIOXO-6-(TR... (ZK1a)
3b: {[7-MORPHOLIN-4-YL-2,3-DIOXO-6-(TR... (ZK1b)
3c: {[7-MORPHOLIN-4-YL-2,3-DIOXO-6-(TR... (ZK1c)
3d: {[7-MORPHOLIN-4-YL-2,3-DIOXO-6-(TR... (ZK1d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZK1
4
Ligand/Ion
{[7-MORPHOLIN-4-YL-2,3-DIOXO-6-(TRIFLUOROMETHYL)-3,4-DIHYDROQUINOXALIN-1(2H)-YL]METHYL}PHOSPHONIC ACID
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:402 , TYR A:405 , TYR A:450 , PRO A:478 , LEU A:479 , THR A:480 , ARG A:485 , GLY A:653 , SER A:654 , THR A:686 , THR A:707 , TYR A:732
BINDING SITE FOR RESIDUE ZK1 A 833
02
AC2
SOFTWARE
GLN A:337 , ASN A:344 , ASN A:355 , NAG A:835
BINDING SITE FOR RESIDUE NAG A 834
03
AC3
SOFTWARE
NAG A:834 , BMA A:836
BINDING SITE FOR RESIDUE NAG A 835
04
AC4
SOFTWARE
NAG A:835 , BMA A:837
BINDING SITE FOR RESIDUE BMA A 836
05
AC5
SOFTWARE
BMA A:836
BINDING SITE FOR RESIDUE BMA A 837
06
AC6
SOFTWARE
GLU B:402 , TYR B:405 , TYR B:450 , PRO B:478 , LEU B:479 , THR B:480 , ARG B:485 , GLY B:653 , SER B:654 , THR B:686 , THR B:707 , TYR B:732
BINDING SITE FOR RESIDUE ZK1 B 833
07
AC7
SOFTWARE
GLN B:337 , ASN B:344 , ASN B:355 , NAG B:835
BINDING SITE FOR RESIDUE NAG B 834
08
AC8
SOFTWARE
NAG B:834 , BMA B:836
BINDING SITE FOR RESIDUE NAG B 835
09
AC9
SOFTWARE
NAG B:835 , BMA B:837
BINDING SITE FOR RESIDUE BMA B 836
10
BC1
SOFTWARE
BMA B:836 , ASP C:454
BINDING SITE FOR RESIDUE BMA B 837
11
BC2
SOFTWARE
GLU C:402 , TYR C:405 , TYR C:450 , PRO C:478 , LEU C:479 , THR C:480 , ARG C:485 , GLY C:653 , SER C:654 , THR C:686 , THR C:707 , TYR C:732
BINDING SITE FOR RESIDUE ZK1 C 833
12
BC3
SOFTWARE
ASN C:355 , NAG C:835
BINDING SITE FOR RESIDUE NAG C 834
13
BC4
SOFTWARE
NAG C:834 , BMA C:836
BINDING SITE FOR RESIDUE NAG C 835
14
BC5
SOFTWARE
NAG C:835
BINDING SITE FOR RESIDUE BMA C 836
15
BC6
SOFTWARE
GLU D:402 , TYR D:405 , TYR D:450 , PRO D:478 , LEU D:479 , THR D:480 , ARG D:485 , GLY D:653 , SER D:654 , THR D:686 , THR D:707 , TYR D:732
BINDING SITE FOR RESIDUE ZK1 D 833
16
BC7
SOFTWARE
GLN D:337 , ASN D:344 , ASN D:355 , NAG D:835
BINDING SITE FOR RESIDUE NAG D 834
17
BC8
SOFTWARE
NAG D:834 , BMA D:836
BINDING SITE FOR RESIDUE NAG D 835
18
BC9
SOFTWARE
NAG D:835
BINDING SITE FOR RESIDUE BMA D 836
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GRIA2_RAT_001 (Q586R, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GRIA2_RAT_001
*
Q
607
R
GRIA2_RAT
---
---
A/B/C/D
Q
586
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(3, 16)
Info
all CATH domains
1a: CATH_3kg2B03 (B:393-498,B:733-772)
1b: CATH_3kg2D03 (D:393-498,D:733-772)
1c: CATH_3kg2A03 (A:393-498,A:733-782)
1d: CATH_3kg2C03 (C:393-498,C:733-782)
2a: CATH_3kg2A02 (A:113-248,A:355-385)
2b: CATH_3kg2C02 (C:113-248,C:355-385)
2c: CATH_3kg2B01 (B:10-99,B:282-352)
2d: CATH_3kg2D02 (D:113-248,D:355-385)
2e: CATH_3kg2B02 (B:100-247,B:353-385)
2f: CATH_3kg2D01 (D:10-112,D:284-354)
2g: CATH_3kg2A01 (A:10-112,A:249-354)
2h: CATH_3kg2C01 (C:10-112,C:249-354)
3a: CATH_3kg2A05 (A:509-630,A:786-817)
3b: CATH_3kg2C05 (C:509-630,C:786-817)
3c: CATH_3kg2B05 (B:509-630,B:785-817)
3d: CATH_3kg2D05 (D:509-630,D:785-817)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3kg2B03
B:393-498,B:733-772
1b
3kg2D03
D:393-498,D:733-772
1c
3kg2A03
A:393-498,A:733-782
1d
3kg2C03
C:393-498,C:733-782
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Rat (Rattus norvegicus)
(2)
2a
3kg2A02
A:113-248,A:355-385
2b
3kg2C02
C:113-248,C:355-385
2c
3kg2B01
B:10-99,B:282-352
2d
3kg2D02
D:113-248,D:355-385
2e
3kg2B02
B:100-247,B:353-385
2f
3kg2D01
D:10-112,D:284-354
2g
3kg2A01
A:10-112,A:249-354
2h
3kg2C01
C:10-112,C:249-354
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Rat (Rattus norvegicus)
(1)
3a
3kg2A05
A:509-630,A:786-817
3b
3kg2C05
C:509-630,C:786-817
3c
3kg2B05
B:509-630,B:785-817
3d
3kg2D05
D:509-630,D:785-817
[
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Lig_chan_3kg2D01 (D:522-803)
1b: PFAM_Lig_chan_3kg2D02 (D:522-803)
1c: PFAM_Lig_chan_3kg2D03 (D:522-803)
1d: PFAM_Lig_chan_3kg2D04 (D:522-803)
2a: PFAM_Lig_chan_Glu_bd_3kg2D05 (D:404-469)
2b: PFAM_Lig_chan_Glu_bd_3kg2D06 (D:404-469)
2c: PFAM_Lig_chan_Glu_bd_3kg2D07 (D:404-469)
2d: PFAM_Lig_chan_Glu_bd_3kg2D08 (D:404-469)
3a: PFAM_ANF_receptor_3kg2D09 (D:33-364)
3b: PFAM_ANF_receptor_3kg2D10 (D:33-364)
3c: PFAM_ANF_receptor_3kg2D11 (D:33-364)
3d: PFAM_ANF_receptor_3kg2D12 (D:33-364)
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Clans
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)
(
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Families
(
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)
Organisms
(
)
(
)
Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-3kg2D01
D:522-803
1b
Lig_chan-3kg2D02
D:522-803
1c
Lig_chan-3kg2D03
D:522-803
1d
Lig_chan-3kg2D04
D:522-803
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-3kg2D05
D:404-469
2b
Lig_chan-Glu_bd-3kg2D06
D:404-469
2c
Lig_chan-Glu_bd-3kg2D07
D:404-469
2d
Lig_chan-Glu_bd-3kg2D08
D:404-469
Clan
:
Periplas_BP
(97)
Family
:
ANF_receptor
(21)
Rattus norvegicus (Rat)
(13)
3a
ANF_receptor-3kg2D09
D:33-364
3b
ANF_receptor-3kg2D10
D:33-364
3c
ANF_receptor-3kg2D11
D:33-364
3d
ANF_receptor-3kg2D12
D:33-364
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