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3KFQ
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
UNREDUCED CATHEPSIN V IN COMPLEX WITH STEFIN A
Authors
:
M. Renko, D. Turk
Date
:
27 Oct 09 (Deposition) - 03 Nov 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Papain-Like Cysteine Protease, Cathepsin, Protease-Inhibitor Complex, Hydrolase, Lysosome, Protease, Thiol Protease, Zymogen, Protease Inhibitor, Thiol Protease Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
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Reference
:
M. Renko, D. Turk
Unreduced Cathepsin V In Complex With Stefin A
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: S-METHYL-THIO-CYSTEINE (SCHa)
1b: S-METHYL-THIO-CYSTEINE (SCHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SCH
2
Mod. Amino Acid
S-METHYL-THIO-CYSTEINE
[
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048851 (T96M, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048851
T
96
M
CYTA_HUMAN
Polymorphism
34173813
C/D
T
96
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CYSTATIN (C:45-58,D:45-58)
2: THIOL_PROTEASE_CYS (A:19-30,B:19-30)
3: THIOL_PROTEASE_HIS (A:162-172,B:162-172)
4: THIOL_PROTEASE_ASN (A:183-202,B:183-202)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTATIN
PS00287
Cysteine proteases inhibitors signature.
CYTA_HUMAN
45-58
2
C:45-58
D:45-58
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATL2_HUMAN
132-143
2
A:19-30
B:19-30
3
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATL2_HUMAN
275-285
2
A:162-172
B:162-172
4
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATL2_HUMAN
296-315
2
A:183-202
B:183-202
[
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Exons
(8, 16)
Info
All Exons
Exon 1.5b (A:1-19 | B:1-19)
Exon 1.6 (A:20-94 | B:20-94)
Exon 1.7 (A:95-150 | B:95-150)
Exon 1.8 (A:150-189 | B:150-189)
Exon 1.9 (A:189-221 | B:189-221)
Exon 2.1a (C:1-22 | D:1-22)
Exon 2.2a (C:23-56 | D:23-56)
Exon 2.3 (C:57-98 | D:57-98)
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All Exon Boundaries
01: Boundary 1.4/1.5b
02: Boundary 1.5b/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/-
07: Boundary -/2.1a
08: Boundary 2.1a/2.2a
09: Boundary 2.2a/2.3
10: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000259470
1a
ENSE00001226722
chr9:
99801592-99801353
240
CATL2_HUMAN
-
0
0
-
-
1.3
ENST00000259470
3
ENSE00002180785
chr9:
99800335-99800200
136
CATL2_HUMAN
1-42
42
0
-
-
1.4
ENST00000259470
4
ENSE00001793524
chr9:
99799897-99799775
123
CATL2_HUMAN
43-83
41
0
-
-
1.5b
ENST00000259470
5b
ENSE00001633766
chr9:
99799680-99799534
147
CATL2_HUMAN
84-132
49
2
A:1-19
B:1-19
19
19
1.6
ENST00000259470
6
ENSE00000926439
chr9:
99799029-99798805
225
CATL2_HUMAN
133-207
75
2
A:20-94
B:20-94
75
75
1.7
ENST00000259470
7
ENSE00000926438
chr9:
99797975-99797810
166
CATL2_HUMAN
208-263
56
2
A:95-150
B:95-150
56
56
1.8
ENST00000259470
8
ENSE00001781677
chr9:
99797125-99797008
118
CATL2_HUMAN
263-302
40
2
A:150-189
B:150-189
40
40
1.9
ENST00000259470
9
ENSE00000926436
chr9:
99795330-99794940
391
CATL2_HUMAN
302-334
33
2
A:189-221
B:189-221
33
33
2.1a
ENST00000264474
1a
ENSE00001154693
chr3:
122044091-122044205
115
CYTA_HUMAN
1-22
22
2
C:1-22
D:1-22
22
22
2.2a
ENST00000264474
2a
ENSE00001078746
chr3:
122056394-122056495
102
CYTA_HUMAN
23-56
34
2
C:23-56
D:23-56
34
34
2.3
ENST00000264474
3
ENSE00001154683
chr3:
122060286-122060819
534
CYTA_HUMAN
57-98
42
2
C:57-98
D:57-98
42
42
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3kfqc_ (C:)
1b: SCOP_d3kfqd_ (D:)
2a: SCOP_d3kfqa_ (A:)
2b: SCOP_d3kfqb_ (B:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Cystatins
(31)
Protein domain
:
Cystatin A (stefin A)
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d3kfqc_
C:
1b
d3kfqd_
D:
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
(Pro)cathepsin V
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d3kfqa_
A:
2b
d3kfqb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cystatin_3kfqD01 (D:4-92)
1b: PFAM_Cystatin_3kfqD02 (D:4-92)
2a: PFAM_Peptidase_C1_3kfqB01 (B:1-220)
2b: PFAM_Peptidase_C1_3kfqB02 (B:1-220)
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Organisms
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)
(
)
Clan
:
Cystatin
(20)
Family
:
Cystatin
(15)
Homo sapiens (Human)
(12)
1a
Cystatin-3kfqD01
D:4-92
1b
Cystatin-3kfqD02
D:4-92
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Homo sapiens (Human)
(45)
2a
Peptidase_C1-3kfqB01
B:1-220
2b
Peptidase_C1-3kfqB02
B:1-220
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Asym.Unit (119 KB)
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