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Asym. Unit
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Asym.Unit (192 KB)
Biol.Unit 1 (186 KB)
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(1)
Title
:
LEISHMANIA MAJOR METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH METHIONYLADENYLATE AND PYROPHOSPHATE
Authors
:
E. T. Larson, E. A. Merritt, Medical Structural Genomics Of Pathog Protozoa (Msgpp)
Date
:
27 Oct 09 (Deposition) - 27 Oct 10 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Leishmania, Parasite, Aminoacyl-Trna Synthetase, Trna Ligase, Aars, Metrs, Methionine, Translation, Atp-Binding, Nucleotide-Binding, Structural Genomics, Msgpp, Ligase, Medical Structural Genomics Of Pathogenic Protozoa
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. T. Larson, J. E. Kim, F. H. Zucker, A. Kelley, N. Mueller, A. J. Napuli C. L. Verlinde, E. Fan, F. S. Buckner, W. C. Van Voorhis, E. A. Merritt, W. G. Hol
Structure Of Leishmania Major Methionyl-Trna Synthetase In Complex With Intermediate Products Methionyladenylate And Pyrophosphate.
Biochimie V. 93 570 2011
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
3a: [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-... (ME8a)
4a: MAGNESIUM ION (MGa)
5a: PYROPHOSPHATE 2- (POPa)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
4
Ligand/Ion
FORMIC ACID
3
ME8
1
Ligand/Ion
[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] (2S)-2-AZANYL-4-METHYLSULFANYL-BUTANOATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
POP
1
Ligand/Ion
PYROPHOSPHATE 2-
6
ZN
1
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:216 , ILE A:217 , TYR A:218 , TYR A:219 , HIS A:225 , GLY A:227 , HIS A:228 , SER A:231 , ASP A:256 , TRP A:443 , ALA A:446 , ASN A:449 , TYR A:450 , GLY A:484 , ASP A:486 , ILE A:487 , HIS A:491 , HIS A:513 , GLY A:514 , TRP A:515 , TRP A:516 , LYS A:522 , ILE A:523 , LYS A:525 , POP A:802 , MG A:803 , HOH A:1058
BINDING SITE FOR RESIDUE ME8 A 801
02
AC2
SOFTWARE
ASN A:221 , HIS A:225 , HIS A:228 , LYS A:261 , LYS A:522 , SER A:524 , LYS A:525 , SER A:526 , ME8 A:801 , MG A:803 , EDO A:811 , HOH A:1002 , HOH A:1057 , HOH A:1118
BINDING SITE FOR RESIDUE POP A 802
03
AC3
SOFTWARE
ME8 A:801 , POP A:802 , HOH A:1057 , HOH A:1058 , HOH A:1118
BINDING SITE FOR RESIDUE MG A 803
04
AC4
SOFTWARE
HIS A:258 , GLU A:307 , HOH A:1211 , HOH A:1212
BINDING SITE FOR RESIDUE ZN A 804
05
AC5
SOFTWARE
HIS A:364 , LYS A:522 , SER A:524 , SER A:526 , LEU A:527 , POP A:802 , HOH A:1118
BINDING SITE FOR RESIDUE EDO A 811
06
AC6
SOFTWARE
TYR A:230 , GLY A:514 , ASN A:554 , PHE A:555 , ASP A:557
BINDING SITE FOR RESIDUE EDO A 812
07
AC7
SOFTWARE
ARG A:240 , ARG A:243 , ASP A:294
BINDING SITE FOR RESIDUE EDO A 813
08
AC8
SOFTWARE
THR A:341 , ASP A:415 , TYR A:494 , FMT A:822
BINDING SITE FOR RESIDUE EDO A 814
09
AC9
SOFTWARE
GLU A:361 , ASP A:486 , LEU A:488 , LYS A:489 , FMT A:821 , HOH A:1187
BINDING SITE FOR RESIDUE EDO A 815
10
BC1
SOFTWARE
ASP A:694 , ARG A:703
BINDING SITE FOR RESIDUE EDO A 816
11
BC2
SOFTWARE
THR A:278 , SER A:282 , LYS A:285
BINDING SITE FOR RESIDUE EDO A 817
12
BC3
SOFTWARE
GLU A:404 , THR A:408 , LYS A:489 , EDO A:815
BINDING SITE FOR RESIDUE FMT A 821
13
BC4
SOFTWARE
LEU A:413 , EDO A:814 , HOH A:1064
BINDING SITE FOR RESIDUE FMT A 822
14
BC5
SOFTWARE
HIS A:631
BINDING SITE FOR RESIDUE FMT A 823
15
BC6
SOFTWARE
ASP A:638
BINDING SITE FOR RESIDUE FMT A 824
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_tRNA_synt_1g_3kflA01 (A:211-586)
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Clan
:
HUP
(230)
Family
:
tRNA-synt_1g
(19)
Leishmania major
(1)
1a
tRNA-synt_1g-3kflA01
A:211-586
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Chain A
Asymmetric Unit 1
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