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3KF5
Asym. Unit
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Asym.Unit (179 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
STRUCTURE OF INVERTASE FROM SCHWANNIOMYCES OCCIDENTALIS
Authors
:
J. Sanz-Aparicio, A. Polo
Date
:
27 Oct 09 (Deposition) - 23 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Invertase, Gh32, Glycoprotein, Glycosidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alvaro-Benito, A. Polo, B. Gonzalez, M. Fernandez-Lobato, J. Sanz-Aparicio
Structural And Kinetic Analysis Of Schwanniomyces Occidentalis Invertase Reveals A New Oligomerization Patter And The Role Of Its Supplementary Domain In Substrate Binding
J. Biol. Chem. V. 285 13930 2010
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:72 , ASP A:105
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
ASN A:119 , LYS A:378
BINDING SITE FOR RESIDUE NAG A 2001
03
AC3
SOFTWARE
GLU A:200 , LYS A:202 , GLN A:204 , ASN A:219
BINDING SITE FOR RESIDUE NAG A 3001
04
AC4
SOFTWARE
LEU A:306 , ASN A:334
BINDING SITE FOR RESIDUE NAG A 4001
05
AC5
SOFTWARE
ASN A:394 , TYR A:478 , HOH A:645
BINDING SITE FOR RESIDUE NAG A 5001
06
AC6
SOFTWARE
ASN A:49 , ASP A:50 , GLN A:68 , TRP A:76 , LEU A:80 , ASP A:179 , GLU A:230 , GOL A:6002
BINDING SITE FOR RESIDUE GOL A 6001
07
AC7
SOFTWARE
ARG A:178 , GLU A:230 , ASN A:254 , TRP A:314 , GOL A:6001 , GOL A:6003
BINDING SITE FOR RESIDUE GOL A 6002
08
AC8
SOFTWARE
GOL A:6002
BINDING SITE FOR RESIDUE GOL A 6003
09
AC9
SOFTWARE
GLU B:200 , LYS B:202 , GLN B:204 , ASN B:219
BINDING SITE FOR RESIDUE NAG B 3001
10
BC1
SOFTWARE
ASN B:334 , THR B:336 , HOH B:567
BINDING SITE FOR RESIDUE NAG B 4001
11
BC2
SOFTWARE
ASN B:394 , TYR B:478 , HOH B:541 , HOH B:544
BINDING SITE FOR RESIDUE NAG B 5001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F32 (A:40-53,B:40-53)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F32
PS00609
Glycosyl hydrolases family 32 active site.
INV_SCHOC
40-53
2
A:40-53
B:40-53
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_32N_3kf5B01 (B:40-350)
1b: PFAM_Glyco_hydro_32N_3kf5B02 (B:40-350)
2a: PFAM_Glyco_hydro_32C_3kf5B03 (B:391-493)
2b: PFAM_Glyco_hydro_32C_3kf5B04 (B:391-493)
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Clans
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(
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Organisms
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)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_32N
(13)
Schwanniomyces occidentalis (Yeast) (Debaryomyces occidentalis)
(1)
1a
Glyco_hydro_32N-3kf5B01
B:40-350
1b
Glyco_hydro_32N-3kf5B02
B:40-350
Clan
:
no clan defined [family: Glyco_hydro_32C]
(13)
Family
:
Glyco_hydro_32C
(13)
Schwanniomyces occidentalis (Yeast) (Debaryomyces occidentalis)
(1)
2a
Glyco_hydro_32C-3kf5B03
B:391-493
2b
Glyco_hydro_32C-3kf5B04
B:391-493
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Asymmetric Unit 1
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Asym.Unit (179 KB)
Header - Asym.Unit
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