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Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (30 KB)
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Title
:
CRYSTAL STRUCTURE OF THE AUTOPROTEOLYTIC DOMAIN FROM THE NUCLEAR PORE COMPLEX COMPONENT NUP145 FROM SACCHAROMYCES CEREVISIAE IN THE HEXAGONAL, P61 SPACE GROUP
Authors
:
P. Sampathkumar, S. A. Ozyurt, J. Do, K. Bain, M. Dickey, T. Gheyi, A. Sal S. J. Kim, J. Phillips, U. Pieper, J. Fernandez-Martinez, J. D. Franke S. Atwell, D. A. Thompson, J. S. Emtage, S. Wasserman, M. Rout, J. M. Sau S. K. Burley, New York Sgx Research Center For Structural Geno (Nysgxrc)
Date
:
26 Oct 09 (Deposition) - 22 Dec 09 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nuclear Pore Complex, Nup145, Nup145-N, Yeast, Autoproteolysis, Protein Maturation, Post-Translational Modification, Structural Genomics, Psi-2, Protein Structure Initiative, Nysgxrc, Rna-Binding, New York Sgx Research Center For Structural Genomics, Protein Transport, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sampathkumar, S. A. Ozyurt, J. Do, K. T. Bain, M. Dickey, L. A. Rodgers, T. Gheyi, A. Sali, S. J. Kim, J. Phillips, U. Pieper, J. Fernandez-Martinez, J. D. Franke, A. Martel, H. Tsuruta, S. Atwell D. A. Thompson, J. S. Emtage, S. R. Wasserman, M. P. Rout, J. M. Sauder, S. K. Burley
Structures Of The Autoproteolytic Domain From The Saccharomyces Cerevisiae Nuclear Pore Complex Component, Nup145.
Proteins V. 78 1992 2010
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Hetero Components
(2, 30)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:120 , TRP A:462 , CYS A:463 , SER A:466 , PRO A:467 , PHE B:570
BINDING SITE FOR RESIDUE EDO A 2
02
AC2
SOFTWARE
SER A:482 , ASN A:483 , GLN A:497 , HIS A:498 , ASP A:499 , ARG B:581
BINDING SITE FOR RESIDUE EDO A 3
03
AC3
SOFTWARE
ARG A:489 , GLY A:490 , GLU A:551 , HOH A:615 , PHE B:594
BINDING SITE FOR RESIDUE EDO A 4
04
AC4
SOFTWARE
HOH A:32 , HIS A:498 , ASP A:499
BINDING SITE FOR RESIDUE EDO A 5
05
AC5
SOFTWARE
ASP A:577 , TYR A:588 , TYR A:591 , VAL B:485 , HOH B:619
BINDING SITE FOR RESIDUE EDO A 7
06
AC6
SOFTWARE
HOH A:102 , PHE A:594 , GLY A:595 , ARG B:489
BINDING SITE FOR RESIDUE EDO A 16
07
AC7
SOFTWARE
VAL A:485 , ASP B:577 , TYR B:591
BINDING SITE FOR RESIDUE EDO B 1
08
AC8
SOFTWARE
PHE A:570 , TRP B:462 , CYS B:463 , SER B:466 , PRO B:467
BINDING SITE FOR RESIDUE EDO B 6
09
AC9
SOFTWARE
HOH B:128 , GLN B:497 , PRO B:545 , LYS B:601 , ASN B:603
BINDING SITE FOR RESIDUE EDO B 8
10
BC1
SOFTWARE
HOH B:56 , HOH B:158 , ALA B:480 , VAL B:481 , SER B:482 , ASP B:499
BINDING SITE FOR RESIDUE EDO B 9
11
BC2
SOFTWARE
PHE A:594 , HOH B:25 , ARG B:488 , ARG B:489 , GLY B:490 , GLU B:551
BINDING SITE FOR RESIDUE EDO B 10
12
BC3
SOFTWARE
EDO B:22 , HOH B:161 , ASP B:501 , LEU B:502 , THR B:503 , ALA B:504 , PHE B:505 , TYR B:529 , GLY B:541
BINDING SITE FOR RESIDUE EDO B 11
13
BC4
SOFTWARE
EDO B:13 , HOH B:100 , GLU B:471 , THR B:506 , SER B:508 , PHE B:509
BINDING SITE FOR RESIDUE EDO B 12
14
BC5
SOFTWARE
EDO B:12 , PRO B:467 , GLU B:471 , SER B:508 , PHE B:509 , ARG B:510
BINDING SITE FOR RESIDUE EDO B 13
15
BC6
SOFTWARE
SER A:482 , HOH B:136 , HIS B:540
BINDING SITE FOR RESIDUE EDO B 14
16
BC7
SOFTWARE
GLU B:572 , VAL B:575 , PHE B:576
BINDING SITE FOR RESIDUE EDO B 15
17
BC8
SOFTWARE
EDO B:18 , HOH B:153 , SER B:582
BINDING SITE FOR RESIDUE EDO B 17
18
BC9
SOFTWARE
EDO B:17 , EDO B:19 , HOH B:128 , HOH B:150 , HIS B:498 , VAL B:575 , ARG B:578 , LYS B:579
BINDING SITE FOR RESIDUE EDO B 18
19
CC1
SOFTWARE
EDO B:18 , EDO B:20 , HOH B:150 , HIS B:498 , ILE B:538 , GLY B:539 , VAL B:544 , PRO B:545 , ARG B:578 , HOH B:614
BINDING SITE FOR RESIDUE EDO B 19
20
CC2
SOFTWARE
EDO B:19 , EDO B:21 , HOH B:150 , HIS B:498 , ASP B:499 , GLY B:539 , ARG B:578
BINDING SITE FOR RESIDUE EDO B 20
21
CC3
SOFTWARE
EDO B:20 , HOH B:101 , HOH B:111 , ALA B:479 , ASP B:499 , VAL B:500 , ASP B:501 , GLY B:539 , GLY B:541
BINDING SITE FOR RESIDUE EDO B 21
22
CC4
SOFTWARE
EDO B:11 , HOH B:107 , ASP B:501 , THR B:503 , PRO B:536
BINDING SITE FOR RESIDUE EDO B 22
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NUP_C (B:458-605)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUP_C
PS51434
NUP C-terminal domain profile.
NU145_YEAST
458-605
1
B:458-605
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:459-606 (gaps) | B:453-607 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL092W
1
YGL092W.1
VII:337909-341862
3954
NU145_YEAST
1-1317
1317
2
A:459-606 (gaps)
B:453-607 (gaps)
148
177
[
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SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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