PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3KEN
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN EG5 IN COMPLEX WITH S-TRITYL-L-CYSTEINE
Authors
:
C. L. Parke, E. J. Wojcik, S. Kim, D. K. Worthylake
Date
:
26 Oct 09 (Deposition) - 16 Mar 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Cycle, Kinesin-Inhibitor Complex, Motor Domain, L5 Loop, Atp- Binding, Cell Division, Coiled Coil, Microtubule, Mitosis, Motor Protein, Nucleotide-Binding, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. D. Kim, R. Buckley, S. Learman, J. Richard, C. Parke, D. K. Worthylake, E. J. Wojcik, R. A. Walker, S. Kim
Allosteric Drug Discrimination Is Coupled To Mechanochemical Changes In The Kinesin-5 Motor Core.
J. Biol. Chem. V. 285 18650 2010
[
close entry info
]
Hetero Components
(4, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: N,N-DIMETHYLMETHANAMINE (KENa)
3a: MAGNESIUM ION (MGa)
4a: S-TRITYL-L-CYSTEINE (ZZDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
KEN
1
Ligand/Ion
N,N-DIMETHYLMETHANAMINE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
ZZD
1
Ligand/Ion
S-TRITYL-L-CYSTEINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:24 , ARG A:26 , PRO A:27 , GLN A:106 , THR A:107 , GLY A:108 , THR A:109 , GLY A:110 , LYS A:111 , THR A:112 , PHE A:113 , HOH A:380 , HOH A:401 , HOH A:428 , MG A:701
BINDING SITE FOR RESIDUE ADP A 1452
2
AC2
SOFTWARE
THR A:112 , GLU A:116 , GLY A:117 , GLU A:118 , ARG A:119 , PRO A:137 , TYR A:211 , LEU A:214 , GLU A:215 , ARG A:221
BINDING SITE FOR RESIDUE ZZD A 370
3
AC3
SOFTWARE
ASN A:165 , GLU A:167 , ARG A:181
BINDING SITE FOR RESIDUE KEN A 371
4
AC4
SOFTWARE
THR A:112 , HOH A:387 , HOH A:392 , HOH A:393 , HOH A:428 , ADP A:1452
BINDING SITE FOR RESIDUE MG A 701
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067829 (F144L, chain A, )
2: VAR_067830 (R234C, chain A, )
3: VAR_067831 (S235C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067829
F
144
L
KIF11_HUMAN
Disease (MCLMR)
---
A
F
144
L
2
UniProt
VAR_067830
R
234
C
KIF11_HUMAN
Disease (MCLMR)
---
A
R
234
C
3
UniProt
VAR_067831
S
235
C
KIF11_HUMAN
Disease (MCLMR)
---
A
S
235
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:18-359)
2: KINESIN_MOTOR_1 (A:259-270)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF11_HUMAN
18-359
1
A:18-359
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF11_HUMAN
259-270
1
A:259-270
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.1 (A:18-26)
Exon 1.2 (A:26-70)
Exon 1.3 (A:71-103)
Exon 1.4 (A:103-129)
Exon 1.5 (A:130-191)
Exon 1.6 (A:192-233)
Exon 1.7 (A:233-263)
Exon 1.8 (A:264-344 (gaps))
Exon 1.9 (A:345-366)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260731
1
ENSE00000986575
chr10:
94353043-94353209
167
KIF11_HUMAN
1-26
26
1
A:18-26
9
1.2
ENST00000260731
2
ENSE00001007288
chr10:
94366022-94366154
133
KIF11_HUMAN
26-70
45
1
A:26-70
45
1.3
ENST00000260731
3
ENSE00001007283
chr10:
94366376-94366473
98
KIF11_HUMAN
71-103
33
1
A:71-103
33
1.4
ENST00000260731
4
ENSE00001007277
chr10:
94366916-94366994
79
KIF11_HUMAN
103-129
27
1
A:103-129
27
1.5
ENST00000260731
5
ENSE00001007278
chr10:
94368777-94368962
186
KIF11_HUMAN
130-191
62
1
A:130-191
62
1.6
ENST00000260731
6
ENSE00001007286
chr10:
94369142-94369266
125
KIF11_HUMAN
192-233
42
1
A:192-233
42
1.7
ENST00000260731
7
ENSE00001007276
chr10:
94372797-94372887
91
KIF11_HUMAN
233-263
31
1
A:233-263
31
1.8
ENST00000260731
8
ENSE00001007273
chr10:
94373134-94373376
243
KIF11_HUMAN
264-344
81
1
A:264-344 (gaps)
81
1.9
ENST00000260731
9
ENSE00001007274
chr10:
94376494-94376589
96
KIF11_HUMAN
345-376
32
1
A:345-366
22
1.10
ENST00000260731
10
ENSE00001007282
chr10:
94381142-94381230
89
KIF11_HUMAN
377-406
30
0
-
-
1.11
ENST00000260731
11
ENSE00001007275
chr10:
94388565-94388652
88
KIF11_HUMAN
406-435
30
0
-
-
1.12
ENST00000260731
12
ENSE00001007285
chr10:
94389933-94390121
189
KIF11_HUMAN
436-498
63
0
-
-
1.13
ENST00000260731
13
ENSE00001007284
chr10:
94392243-94392450
208
KIF11_HUMAN
499-568
70
0
-
-
1.14
ENST00000260731
14
ENSE00001007281
chr10:
94393380-94393552
173
KIF11_HUMAN
568-625
58
0
-
-
1.15
ENST00000260731
15
ENSE00001007287
chr10:
94396941-94397066
126
KIF11_HUMAN
626-667
42
0
-
-
1.16
ENST00000260731
16
ENSE00001007280
chr10:
94397144-94397302
159
KIF11_HUMAN
668-720
53
0
-
-
1.17
ENST00000260731
17
ENSE00001007279
chr10:
94399551-94399657
107
KIF11_HUMAN
721-756
36
0
-
-
1.18
ENST00000260731
18
ENSE00000986592
chr10:
94405120-94405399
280
KIF11_HUMAN
756-849
94
0
-
-
1.19
ENST00000260731
19
ENSE00000932880
chr10:
94407969-94408191
223
KIF11_HUMAN
850-924
75
0
-
-
1.20
ENST00000260731
20
ENSE00000986593
chr10:
94409592-94409743
152
KIF11_HUMAN
924-974
51
0
-
-
1.21
ENST00000260731
21
ENSE00000986594
chr10:
94410158-94410274
117
KIF11_HUMAN
975-1013
39
0
-
-
1.22
ENST00000260731
22
ENSE00000986595
chr10:
94413422-94415150
1729
KIF11_HUMAN
1014-1056
43
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kena_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Motor proteins
(119)
Protein domain
:
automated matches
(40)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3kena_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3kenA00 (A:18-366)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
3kenA00
A:18-366
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Kinesin_3kenA01 (A:24-359)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Kinesin
(42)
Homo sapiens (Human)
(23)
1a
Kinesin-3kenA01
A:24-359
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (62 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3KEN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
