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3KDW
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE SUGAR BINDING PROTEIN (YP_001300177.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.70 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
23 Oct 09 (Deposition) - 24 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Putative Sugar Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Sugar Binding Protein (Yp_001300177. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 7 A Resolution
To Be Published
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
5g: PHOSPHATE ION (PO4g)
View:
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
5
PO4
7
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:-1 , ARG A:26 , HOH A:433
BINDING SITE FOR RESIDUE CL A 300
02
AC2
SOFTWARE
HOH A:411 , HOH A:422 , HOH A:594 , HOH A:611
BINDING SITE FOR RESIDUE MPD A 301
03
AC3
SOFTWARE
LYS A:104 , ARG A:110 , PHE A:172 , HOH A:411 , HOH A:422 , HOH A:594 , HOH A:611
BINDING SITE FOR RESIDUE MRD A 302
04
AC4
SOFTWARE
THR A:147 , ASN A:194 , ARG A:208
BINDING SITE FOR RESIDUE MPD A 303
05
AC5
SOFTWARE
LEU A:24 , ASN A:195 , HOH A:523
BINDING SITE FOR RESIDUE PO4 A 304
06
AC6
SOFTWARE
ARG A:40 , HOH A:438 , HOH A:478 , HOH A:531
BINDING SITE FOR RESIDUE PO4 A 305
07
AC7
SOFTWARE
LEU A:50 , THR A:51 , ASP A:52 , LYS A:85 , GLN A:127 , HOH A:482 , HOH A:524 , HOH A:550
BINDING SITE FOR RESIDUE PO4 A 306
08
AC8
SOFTWARE
ASP A:129 , ASP A:133 , MSE A:141 , ARG A:170 , HOH A:399 , HOH A:400
BINDING SITE FOR RESIDUE PO4 A 307
09
AC9
SOFTWARE
LYS A:155 , GLU A:157 , ASN A:178 , SER A:179 , HOH A:389 , HOH A:398 , HOH A:579
BINDING SITE FOR RESIDUE PO4 A 308
10
BC1
SOFTWARE
TYR A:144 , GLU A:156 , HOH A:401
BINDING SITE FOR RESIDUE PO4 A 309
11
BC2
SOFTWARE
SER A:120 , TYR A:122 , LEU A:123
BINDING SITE FOR RESIDUE PO4 A 310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_DUF3826_3kdwA01 (A:32-217)
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Clan
:
no clan defined [family: DUF3826]
(1)
Family
:
DUF3826
(1)
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
(1)
1a
DUF3826-3kdwA01
A:32-217
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Chain A
Asymmetric Unit 1
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