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3KDS
Asym. Unit
Info
Asym.Unit (440 KB)
Biol.Unit 1 (846 KB)
Biol.Unit 2 (864 KB)
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(1)
Title
:
APO-FTSH CRYSTAL STRUCTURE
Authors
:
C. Bieniossek, B. Niederhauser, U. Baumann
Date
:
23 Oct 09 (Deposition) - 01 Dec 09 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : E,F,G
Biol. Unit 1: E (6x)
Biol. Unit 2: F,G (3x)
Keywords
:
Met-Turn, Beta Roll, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Bieniossek, B. Niederhauser, U. M. Baumann
The Crystal Structure Of Apo-Ftsh Reveals Domain Movements Necessary For Substrate Unfolding And Translocation
Proc. Natl. Acad. Sci. Usa V. 106 21579 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOE... (NHXa)
1b: N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOE... (NHXb)
1c: N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOE... (NHXc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
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No.
Name
Count
Type
Full Name
1
NHX
3
Ligand/Ion
N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOETHYL]-4-METHYLPENTANOYL}-3-NAPHTHALEN-2-YL-L-ALANYL-L-ALANINAMIDE
2
ZN
3
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS E:423 , HIS E:427 , ASP E:500 , NHX E:998
BINDING SITE FOR RESIDUE ZN E 996
2
AC2
SOFTWARE
HIS E:423 , GLU E:424 , HIS E:427 , LYS E:451 , LEU E:453 , GLY E:454 , TYR E:465 , LEU E:466 , SER E:495 , GLY E:496 , ALA E:498 , ASP E:500 , ZN E:996
BINDING SITE FOR RESIDUE NHX E 998
3
AC3
SOFTWARE
HIS F:423 , HIS F:427 , ASP F:500 , NHX F:998
BINDING SITE FOR RESIDUE ZN F 996
4
AC4
SOFTWARE
HIS F:423 , GLU F:424 , HIS F:427 , LYS F:451 , ALA F:452 , LEU F:453 , SER F:495 , GLY F:496 , ALA F:498 , ASP F:500 , ZN F:996 , TYR G:465
BINDING SITE FOR RESIDUE NHX F 998
5
AC5
SOFTWARE
HIS G:423 , HIS G:427 , ASP G:500 , NHX G:998
BINDING SITE FOR RESIDUE ZN G 996
6
AC6
SOFTWARE
TYR F:465 , ILE G:420 , HIS G:423 , GLU G:424 , HIS G:427 , TYR G:450 , LYS G:451 , ALA G:452 , LEU G:453 , GLY G:454 , GLY G:496 , ASN G:499 , ASP G:500 , ZN G:996
BINDING SITE FOR RESIDUE NHX G 998
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: AAA (E:300-318,F:300-318,G:300-318)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AAA
PS00674
AAA-protein family signature.
FTSH_THEMA
300-318
3
E:300-318
F:300-318
G:300-318
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3kdse2 (E:403-603)
1b: SCOP_d3kdsf2 (F:403-603)
1c: SCOP_d3kdsg2 (G:403-603)
2a: SCOP_d3kdse1 (E:156-402)
2b: SCOP_d3kdsf1 (F:156-402)
2c: SCOP_d3kdsg1 (G:156-402)
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Protein Domains
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
FtsH protease domain-like
(4)
Superfamily
:
FtsH protease domain-like
(4)
Family
:
FtsH protease domain-like
(4)
Protein domain
:
automated matches
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d3kdse2
E:403-603
1b
d3kdsf2
F:403-603
1c
d3kdsg2
G:403-603
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
AAA domain of cell division protein FtsH
(8)
Thermotoga maritima [TaxId: 2336]
(3)
2a
d3kdse1
E:156-402
2b
d3kdsf1
F:156-402
2c
d3kdsg1
G:156-402
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_AAA_3kdsG01 (G:197-330)
1b: PFAM_AAA_3kdsG02 (G:197-330)
1c: PFAM_AAA_3kdsG03 (G:197-330)
2a: PFAM_Peptidase_M41_3kdsG04 (G:390-600)
2b: PFAM_Peptidase_M41_3kdsG05 (G:390-600)
2c: PFAM_Peptidase_M41_3kdsG06 (G:390-600)
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Clan
:
P-loop_NTPase
(1112)
Family
:
AAA
(26)
Thermotoga maritima
(1)
1a
AAA-3kdsG01
G:197-330
1b
AAA-3kdsG02
G:197-330
1c
AAA-3kdsG03
G:197-330
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M41
(5)
Thermotoga maritima
(1)
2a
Peptidase_M41-3kdsG04
G:390-600
2b
Peptidase_M41-3kdsG05
G:390-600
2c
Peptidase_M41-3kdsG06
G:390-600
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Asymmetric Unit 1
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