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Getting 'Exon' information from database.
3KBU
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ANKYRIN BINDING DOMAIN OF HUMAN ERYTHROID BETA SPECTRIN (REPEATS 13-15) IN COMPLEX WITH THE SPECTRIN BINDING DOMAIN OF HUMAN ERYTHROID ANKYRIN (ZU5-ANK), EMTS DERIVATIVE
Authors
:
J. J. Ipsaro, A. Mondragon
Date
:
20 Oct 09 (Deposition) - 02 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Complex, Spectrin, Spectrin Repeat, Three Helix Bundle, Ankyrin Binding, Disease Mutation, Structural Protein, Ankyrin, Zu5, Beta Sandwich, Spectrin Binding, Cytoskeleton, Membrane Skeleton, Actin Capping, Actin-Binding, Elliptocytosis, Hereditary Hemolytic Anemia, Phosphoprotein, Alternative Promoter Usage, Ank Repeat, Lipoprotein, Membrane, Sarcoplasmic Reticulum
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Ipsaro, A. Mondragon
Structural Basis For Spectrin Recognition By Ankyrin.
Blood V. 115 4093 2010
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
1c: MERCURY (II) ION (HGc)
1d: MERCURY (II) ION (HGd)
1e: MERCURY (II) ION (HGe)
1f: MERCURY (II) ION (HGf)
1g: MERCURY (II) ION (HGg)
1h: MERCURY (II) ION (HGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HG
8
Ligand/Ion
MERCURY (II) ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:943 , THR C:947 , PHE C:985
BINDING SITE FOR RESIDUE HG C 1
2
AC2
SOFTWARE
LEU D:1006 , CYS D:1052
BINDING SITE FOR RESIDUE HG D 2
3
AC3
SOFTWARE
LEU D:934 , CYS D:951
BINDING SITE FOR RESIDUE HG D 3
4
AC4
SOFTWARE
CYS D:943 , THR D:947 , PHE D:985
BINDING SITE FOR RESIDUE HG D 4
5
AC5
SOFTWARE
CYS C:1052
BINDING SITE FOR RESIDUE HG C 5
6
AC6
SOFTWARE
PHE C:913 , LEU C:934 , CYS C:951
BINDING SITE FOR RESIDUE HG C 6
7
AC7
SOFTWARE
LYS A:1676 , CYS A:1680
BINDING SITE FOR RESIDUE HG A 7
8
AC8
SOFTWARE
GLN B:1630 , LYS B:1676 , CYS B:1680
BINDING SITE FOR RESIDUE HG B 8
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_026411 (V991L, chain C/D, )
2: VAR_054992 (I1054T, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026411
V
991
L
ANK1_HUMAN
Polymorphism
---
C/D
V
991
L
2
UniProt
VAR_054992
I
1054
T
ANK1_HUMAN
Disease (SPH1)
---
C/D
I
1054
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZU5 (C:913-1068,D:913-1068|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZU5
PS51145
ZU5 domain profile.
ANK1_HUMAN
913-1068
1070-1216
2
C:913-1068
D:913-1068
-
[
close PROSITE info
]
Exons
(9, 18)
Info
All Exons
Exon 1.29 (C:911-912 | D:910-912)
Exon 1.30 (C:912-987 | D:912-987)
Exon 1.31 (C:987-1039 (gaps) | D:987-1039 (ga...)
Exon 1.32a (C:1039-1068 | D:1039-1068)
Exon 2.22 (A:1584-1614 | B:1587-1614)
Exon 2.23 (A:1615-1658 | B:1615-1658)
Exon 2.24 (A:1658-1726 | B:1658-1726)
Exon 2.25 (A:1727-1851 (gaps) | B:1727-1851 (...)
Exon 2.26 (A:1852-1889 | B:1852-1893)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.27/1.29
02: Boundary 1.29/1.30
03: Boundary 1.30/1.31
04: Boundary 1.31/1.32a
05: Boundary 1.32a/1.33
06: Boundary 2.21/2.22
07: Boundary 2.22/2.23
08: Boundary 2.23/2.24
09: Boundary 2.24/2.25
10: Boundary 2.25/2.26
11: Boundary 2.26/2.27
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000347528
2a
ENSE00001381881
chr8:
41655140-41655030
111
ANK1_HUMAN
1-9
9
0
-
-
1.4
ENST00000347528
4
ENSE00001252297
chr8:
41615655-41615554
102
ANK1_HUMAN
10-43
34
0
-
-
1.5
ENST00000347528
5
ENSE00001252286
chr8:
41591587-41591489
99
ANK1_HUMAN
44-76
33
0
-
-
1.6
ENST00000347528
6
ENSE00001252279
chr8:
41585524-41585426
99
ANK1_HUMAN
77-109
33
0
-
-
1.7
ENST00000347528
7
ENSE00001252268
chr8:
41584866-41584768
99
ANK1_HUMAN
110-142
33
0
-
-
1.8
ENST00000347528
8
ENSE00001252255
chr8:
41583464-41583279
186
ANK1_HUMAN
143-204
62
0
-
-
1.9
ENST00000347528
9
ENSE00001252247
chr8:
41582072-41581974
99
ANK1_HUMAN
205-237
33
0
-
-
1.10
ENST00000347528
10
ENSE00001252241
chr8:
41581151-41581053
99
ANK1_HUMAN
238-270
33
0
-
-
1.11
ENST00000347528
11
ENSE00001252233
chr8:
41580741-41580643
99
ANK1_HUMAN
271-303
33
0
-
-
1.12
ENST00000347528
12
ENSE00001252224
chr8:
41577376-41577179
198
ANK1_HUMAN
304-369
66
0
-
-
1.13
ENST00000347528
13
ENSE00001252214
chr8:
41575722-41575624
99
ANK1_HUMAN
370-402
33
0
-
-
1.14
ENST00000347528
14
ENSE00001252205
chr8:
41575220-41575122
99
ANK1_HUMAN
403-435
33
0
-
-
1.15
ENST00000347528
15
ENSE00001252199
chr8:
41574569-41574471
99
ANK1_HUMAN
436-468
33
0
-
-
1.16
ENST00000347528
16
ENSE00000692080
chr8:
41573367-41573170
198
ANK1_HUMAN
469-534
66
0
-
-
1.17
ENST00000347528
17
ENSE00001252194
chr8:
41572592-41572494
99
ANK1_HUMAN
535-567
33
0
-
-
1.18
ENST00000347528
18
ENSE00001252187
chr8:
41571772-41571674
99
ANK1_HUMAN
568-600
33
0
-
-
1.19
ENST00000347528
19
ENSE00000532984
chr8:
41566493-41566296
198
ANK1_HUMAN
601-666
66
0
-
-
1.20a
ENST00000347528
20a
ENSE00000692050
chr8:
41563759-41563661
99
ANK1_HUMAN
667-699
33
0
-
-
1.21
ENST00000347528
21
ENSE00000692046
chr8:
41561990-41561892
99
ANK1_HUMAN
700-732
33
0
-
-
1.22
ENST00000347528
22
ENSE00000532987
chr8:
41561657-41561559
99
ANK1_HUMAN
733-765
33
0
-
-
1.23
ENST00000347528
23
ENSE00001252162
chr8:
41559662-41559570
93
ANK1_HUMAN
766-796
31
0
-
-
1.24
ENST00000347528
24
ENSE00001252155
chr8:
41559140-41559068
73
ANK1_HUMAN
797-821
25
0
-
-
1.26
ENST00000347528
26
ENSE00001252145
chr8:
41557066-41556970
97
ANK1_HUMAN
821-853
33
0
-
-
1.27
ENST00000347528
27
ENSE00001252137
chr8:
41555639-41555561
79
ANK1_HUMAN
853-879
27
0
-
-
1.29
ENST00000347528
29
ENSE00001252128
chr8:
41554291-41554194
98
ANK1_HUMAN
880-912
33
2
C:911-912
D:910-912
2
3
1.30
ENST00000347528
30
ENSE00001191945
chr8:
41554105-41553881
225
ANK1_HUMAN
912-987
76
2
C:912-987
D:912-987
76
76
1.31
ENST00000347528
31
ENSE00001252111
chr8:
41552849-41552695
155
ANK1_HUMAN
987-1039
53
2
C:987-1039 (gaps)
D:987-1039 (gaps)
53
53
1.32a
ENST00000347528
32a
ENSE00001252103
chr8:
41552321-41552110
212
ANK1_HUMAN
1039-1109
71
2
C:1039-1068
D:1039-1068
30
30
1.33
ENST00000347528
33
ENSE00000532996
chr8:
41551620-41551416
205
ANK1_HUMAN
1110-1178
69
0
-
-
1.34
ENST00000347528
34
ENSE00000692020
chr8:
41550719-41550623
97
ANK1_HUMAN
1178-1210
33
0
-
-
1.35a
ENST00000347528
35a
ENSE00000532998
chr8:
41550394-41550166
229
ANK1_HUMAN
1210-1286
77
0
-
-
1.36
ENST00000347528
36
ENSE00001252076
chr8:
41548117-41547992
126
ANK1_HUMAN
1287-1328
42
0
-
-
1.37a
ENST00000347528
37a
ENSE00001252070
chr8:
41547864-41547745
120
ANK1_HUMAN
1329-1368
40
0
-
-
1.38
ENST00000347528
38
ENSE00000692006
chr8:
41546107-41546029
79
ANK1_HUMAN
1369-1395
27
0
-
-
1.39
ENST00000347528
39
ENSE00000533002
chr8:
41545748-41545674
75
ANK1_HUMAN
1395-1420
26
0
-
-
1.40
ENST00000347528
40
ENSE00000691993
chr8:
41543801-41543670
132
ANK1_HUMAN
1420-1464
45
0
-
-
1.41
ENST00000347528
41
ENSE00000691972
chr8:
41542208-41542062
147
ANK1_HUMAN
1464-1513
50
0
-
-
1.43b
ENST00000347528
43b
ENSE00000691945
chr8:
41530430-41529872
559
ANK1_HUMAN
1513-1699
187
0
-
-
1.44b
ENST00000347528
44b
ENSE00000691941
chr8:
41526082-41525785
298
ANK1_HUMAN
1699-1798
100
0
-
-
1.47
ENST00000347528
47
ENSE00001252325
chr8:
41521260-41521177
84
ANK1_HUMAN
1799-1826
28
0
-
-
1.48c
ENST00000347528
48c
ENSE00001361299
chr8:
41519459-41519319
141
ANK1_HUMAN
1827-1873
47
0
-
-
1.49e
ENST00000347528
49e
ENSE00001851591
chr8:
41513272-41510739
2534
ANK1_HUMAN
1874-1881
8
0
-
-
2.1
ENST00000389721
1
ENSE00002200989
chr14:
65289866-65289665
202
SPTB1_HUMAN
1-50
50
0
-
-
2.2
ENST00000389721
2
ENSE00001692272
chr14:
65271808-65271657
152
SPTB1_HUMAN
50-100
51
0
-
-
2.3
ENST00000389721
3
ENSE00001642694
chr14:
65270498-65270325
174
SPTB1_HUMAN
101-158
58
0
-
-
2.4
ENST00000389721
4
ENSE00001647147
chr14:
65269035-65268944
92
SPTB1_HUMAN
159-189
31
0
-
-
2.5
ENST00000389721
5
ENSE00001592915
chr14:
65268552-65268472
81
SPTB1_HUMAN
189-216
28
0
-
-
2.6
ENST00000389721
6
ENSE00001601006
chr14:
65268118-65268003
116
SPTB1_HUMAN
216-255
40
0
-
-
2.7
ENST00000389721
7
ENSE00001788289
chr14:
65267586-65267474
113
SPTB1_HUMAN
255-292
38
0
-
-
2.8
ENST00000389721
8
ENSE00001643410
chr14:
65266652-65266465
188
SPTB1_HUMAN
293-355
63
0
-
-
2.9
ENST00000389721
9
ENSE00001793364
chr14:
65264564-65264447
118
SPTB1_HUMAN
355-394
40
0
-
-
2.10
ENST00000389721
10
ENSE00001786358
chr14:
65263433-65263275
159
SPTB1_HUMAN
395-447
53
0
-
-
2.11
ENST00000389721
11
ENSE00001689221
chr14:
65262357-65262055
303
SPTB1_HUMAN
448-548
101
0
-
-
2.12
ENST00000389721
12
ENSE00001643743
chr14:
65261335-65261185
151
SPTB1_HUMAN
549-599
51
0
-
-
2.13
ENST00000389721
13
ENSE00001699666
chr14:
65260585-65259715
871
SPTB1_HUMAN
599-889
291
0
-
-
2.14
ENST00000389721
14
ENSE00001604309
chr14:
65258574-65258437
138
SPTB1_HUMAN
889-935
47
0
-
-
2.15
ENST00000389721
15
ENSE00001594267
chr14:
65253878-65253122
757
SPTB1_HUMAN
935-1187
253
0
-
-
2.16
ENST00000389721
16
ENSE00001597703
chr14:
65252669-65252467
203
SPTB1_HUMAN
1188-1255
68
0
-
-
2.17
ENST00000389721
17
ENSE00000392073
chr14:
65252345-65252255
91
SPTB1_HUMAN
1255-1285
31
0
-
-
2.18
ENST00000389721
18
ENSE00000867578
chr14:
65251111-65250965
147
SPTB1_HUMAN
1286-1334
49
0
-
-
2.19
ENST00000389721
19
ENSE00001506737
chr14:
65249271-65249008
264
SPTB1_HUMAN
1335-1422
88
0
-
-
2.20
ENST00000389721
20
ENSE00001506736
chr14:
65246649-65246443
207
SPTB1_HUMAN
1423-1491
69
0
-
-
2.21
ENST00000389721
21
ENSE00000902497
chr14:
65245964-65245875
90
SPTB1_HUMAN
1492-1521
30
0
-
-
2.22
ENST00000389721
22
ENSE00000658448
chr14:
65242121-65241843
279
SPTB1_HUMAN
1522-1614
93
2
A:1584-1614
B:1587-1614
31
28
2.23
ENST00000389721
23
ENSE00000392079
chr14:
65241245-65241115
131
SPTB1_HUMAN
1615-1658
44
2
A:1615-1658
B:1615-1658
44
44
2.24
ENST00000389721
24
ENSE00000867584
chr14:
65240142-65239938
205
SPTB1_HUMAN
1658-1726
69
2
A:1658-1726
B:1658-1726
69
69
2.25
ENST00000389721
25
ENSE00000867585
chr14:
65239672-65239298
375
SPTB1_HUMAN
1727-1851
125
2
A:1727-1851 (gaps)
B:1727-1851 (gaps)
125
125
2.26
ENST00000389721
26
ENSE00000902494
chr14:
65237847-65237603
245
SPTB1_HUMAN
1852-1933
82
2
A:1852-1889
B:1852-1893
38
42
2.27
ENST00000389721
27
ENSE00000902493
chr14:
65236446-65236308
139
SPTB1_HUMAN
1933-1979
47
0
-
-
2.28
ENST00000389721
28
ENSE00000392084
chr14:
65235836-65235752
85
SPTB1_HUMAN
1980-2008
29
0
-
-
2.29
ENST00000389721
29
ENSE00000867589
chr14:
65234577-65234381
197
SPTB1_HUMAN
2008-2073
66
0
-
-
2.30
ENST00000389721
30
ENSE00000658438
chr14:
65234070-65234021
50
SPTB1_HUMAN
2074-2090
17
0
-
-
2.31c
ENST00000389721
31c
ENSE00001506734
chr14:
65233519-65233148
372
SPTB1_HUMAN
2090-2137
48
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Spectrin_3kbuB01 (B:1797-1893)
1b: PFAM_Spectrin_3kbuB02 (B:1797-1893)
1c: PFAM_Spectrin_3kbuB03 (B:1797-1893)
1d: PFAM_Spectrin_3kbuB04 (B:1797-1893)
1e: PFAM_Spectrin_3kbuB05 (B:1797-1893)
1f: PFAM_Spectrin_3kbuB06 (B:1797-1893)
2a: PFAM_ZU5_3kbuD01 (D:911-1015)
2b: PFAM_ZU5_3kbuD02 (D:911-1015)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Spectrin]
(10)
Family
:
Spectrin
(10)
Homo sapiens (Human)
(8)
1a
Spectrin-3kbuB01
B:1797-1893
1b
Spectrin-3kbuB02
B:1797-1893
1c
Spectrin-3kbuB03
B:1797-1893
1d
Spectrin-3kbuB04
B:1797-1893
1e
Spectrin-3kbuB05
B:1797-1893
1f
Spectrin-3kbuB06
B:1797-1893
Clan
:
no clan defined [family: ZU5]
(4)
Family
:
ZU5
(4)
Homo sapiens (Human)
(4)
2a
ZU5-3kbuD01
D:911-1015
2b
ZU5-3kbuD02
D:911-1015
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
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by Rainbow (Group)
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
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