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3KBP
Biol. Unit 1
Info
Asym.Unit (299 KB)
Biol.Unit 1 (148 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (149 KB)
Biol.Unit 4 (291 KB)
Biol.Unit 5 (290 KB)
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(1)
Title
:
KIDNEY BEAN PURPLE ACID PHOSPHATASE
Authors
:
T. Klabunde, N. Strater, B. Krebs
Date
:
02 Oct 95 (Deposition) - 07 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: D (2x)
Biol. Unit 4: B,C (2x)
Biol. Unit 5: A,D (2x)
Keywords
:
Purple Acid Phosphatase, Hydrolase (Phosphoric Monoester)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Klabunde, N. Strater, R. Frohlich, H. Witzel, B. Krebs
Mechanism Of Fe(Iii)-Zn(Ii) Purple Acid Phosphatase Based O Crystal Structures.
J. Mol. Biol. V. 259 737 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3a: TUNGSTATE(VI)ION (WO4a)
3b: TUNGSTATE(VI)ION (WO4b)
3c: TUNGSTATE(VI)ION (WO4c)
3d: TUNGSTATE(VI)ION (WO4d)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
WO4
2
Ligand/Ion
TUNGSTATE(VI)ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: ACA (UNKNOWN)
07: BC7 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:81 , TYR D:24 , ASP D:50 , GLU D:51
BINDING SITE FOR RESIDUE NAG A 433A
02
AC2
SOFTWARE
TYR A:24 , ARG A:108 , ASN A:109
BINDING SITE FOR RESIDUE NAG A 434A
03
AC3
SOFTWARE
ASP A:16 , ASN A:143 , SER A:147
BINDING SITE FOR RESIDUE NAG A 435A
04
AC4
SOFTWARE
PRO A:208 , GLU A:209 , ASN A:211
BINDING SITE FOR RESIDUE NAG A 436A
05
AC5
SOFTWARE
ASN A:396 , HIS A:399 , TRP A:419
BINDING SITE FOR RESIDUE NAG A 437A
06
ACA
UNKNOWN
FE A:438 , ZN A:439
PHOSPHATASE ACTIVE SITE.
07
BC7
SOFTWARE
TYR A:24 , ASP A:50 , GLU A:51 , ASN D:81
BINDING SITE FOR RESIDUE NAG D 433A
08
CC3
SOFTWARE
ASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:439 , WO4 A:440
BINDING SITE FOR RESIDUE FE A 438
09
CC4
SOFTWARE
ASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:438 , WO4 A:440
BINDING SITE FOR RESIDUE ZN A 439
10
CC5
SOFTWARE
ASP A:164 , TYR A:167 , ASN A:201 , HIS A:202 , HIS A:295 , HIS A:296 , HIS A:323 , HIS A:325 , FE A:438 , ZN A:439
BINDING SITE FOR RESIDUE WO4 A 440
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3kbpa1 (A:9-120)
1b: SCOP_d3kbpc1 (C:9-120)
1c: SCOP_d3kbpd1 (D:9-120)
1d: SCOP_d3kbpb1 (B:9-120)
2a: SCOP_d3kbpa2 (A:121-432)
2b: SCOP_d3kbpc2 (C:121-432)
2c: SCOP_d3kbpd2 (D:121-432)
2d: SCOP_d3kbpb2 (B:121-432)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Purple acid phosphatase, N-terminal domain
(9)
Family
:
Purple acid phosphatase, N-terminal domain
(4)
Protein domain
:
Purple acid phosphatase, N-terminal domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
1a
d3kbpa1
A:9-120
1b
d3kbpc1
C:9-120
1c
d3kbpd1
D:9-120
1d
d3kbpb1
B:9-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
Plant purple acid phosphatase, catalytic domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
2a
d3kbpa2
A:121-432
2b
d3kbpc2
C:121-432
2c
d3kbpd2
D:121-432
2d
d3kbpb2
B:121-432
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3kbpA02 (A:123-432)
1b: CATH_3kbpC02 (C:123-432)
1c: CATH_3kbpD02 (D:123-432)
1d: CATH_3kbpB02 (B:123-432)
2a: CATH_3kbpA01 (A:26-122)
2b: CATH_3kbpC01 (C:26-122)
2c: CATH_3kbpD01 (D:26-122)
2d: CATH_3kbpB01 (B:26-122)
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)
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
1a
3kbpA02
A:123-432
1b
3kbpC02
C:123-432
1c
3kbpD02
D:123-432
1d
3kbpB02
B:123-432
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Purple acid phosphatase, domain1
(6)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
2a
3kbpA01
A:26-122
2b
3kbpC01
C:26-122
2c
3kbpD01
D:26-122
2d
3kbpB01
B:26-122
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Metallophos_3kbpD01 (D:101-300)
1b: PFAM_Metallophos_3kbpD02 (D:101-300)
1c: PFAM_Metallophos_3kbpD03 (D:101-300)
1d: PFAM_Metallophos_3kbpD04 (D:101-300)
2a: PFAM_Metallophos_C_3kbpD05 (D:325-391)
2b: PFAM_Metallophos_C_3kbpD06 (D:325-391)
2c: PFAM_Metallophos_C_3kbpD07 (D:325-391)
2d: PFAM_Metallophos_C_3kbpD08 (D:325-391)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
1a
Metallophos-3kbpD01
D:101-300
1b
Metallophos-3kbpD02
D:101-300
1c
Metallophos-3kbpD03
D:101-300
1d
Metallophos-3kbpD04
D:101-300
Clan
:
no clan defined [family: Metallophos_C]
(5)
Family
:
Metallophos_C
(5)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
2a
Metallophos_C-3kbpD05
D:325-391
2b
Metallophos_C-3kbpD06
D:325-391
2c
Metallophos_C-3kbpD07
D:325-391
2d
Metallophos_C-3kbpD08
D:325-391
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