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3KB8
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (131 KB)
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Title
:
2.09 ANGSTROM RESOLUTION STRUCTURE OF A HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (HPT-1) FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR' IN COMPLEX WITH GMP
Authors
:
A. S. Halavaty, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Pa W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
20 Oct 09 (Deposition) - 27 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hypoxanthine-Guanine Phosphoribosyltransferase, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Glycosyltransferase, Transferase, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 09 Angstrom Resolution Structure Of A Hypoxanthine-Guanin Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' In Complex With Gmp
To Be Published
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
2a: GLYCEROL (GOLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
4j: PHOSPHATE ION (PO4j)
4k: PHOSPHATE ION (PO4k)
4l: PHOSPHATE ION (PO4l)
4m: PHOSPHATE ION (PO4m)
5a: SUCROSE (SUCa)
5b: SUCROSE (SUCb)
5c: SUCROSE (SUCc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
2
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
GOL
1
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PO4
13
Ligand/Ion
PHOSPHATE ION
5
SUC
3
Ligand/Ion
SUCROSE
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU C:42 , LYS C:43 , GLY C:44 , ARG C:165 , HOH C:184
BINDING SITE FOR RESIDUE PO4 C 254
02
AC2
SOFTWARE
ASP C:103 , SER C:104 , GLY C:105 , HOH C:197
BINDING SITE FOR RESIDUE PO4 C 255
03
AC3
SOFTWARE
LEU D:42 , LYS D:43 , GLY D:44 , ARG D:165 , HOH D:240
BINDING SITE FOR RESIDUE PO4 D 256
04
AC4
SOFTWARE
ASP D:103 , SER D:104 , GLY D:105 , HOH D:196
BINDING SITE FOR RESIDUE PO4 D 257
05
AC5
SOFTWARE
LEU A:42 , LYS A:43 , GLY A:44 , ASP A:159 , ARG A:165 , HOH A:256
BINDING SITE FOR RESIDUE PO4 A 258
06
AC6
SOFTWARE
LEU B:42 , LYS B:43 , GLY B:44 , ASP B:159 , ARG B:165 , HOH B:220 , 5GP B:267
BINDING SITE FOR RESIDUE PO4 B 259
07
AC7
SOFTWARE
GLN C:17 , LYS C:54 , GLN D:17 , LYS D:54
BINDING SITE FOR RESIDUE PO4 D 260
08
AC8
SOFTWARE
LYS A:131 , PRO A:149 , HIS A:150 , GLU A:151
BINDING SITE FOR RESIDUE PO4 A 261
09
AC9
SOFTWARE
LYS A:174 , SER A:176
BINDING SITE FOR RESIDUE PO4 A 262
10
BC1
SOFTWARE
ASN B:3 , GLN B:4 , LYS B:174 , HOH B:238 , HOH B:251
BINDING SITE FOR RESIDUE PO4 B 263
11
BC2
SOFTWARE
GLN A:-3 , THR A:34 , VAL A:35 , TYR A:59 , PHE B:-4 , GLN B:-3 , TYR B:-5
BINDING SITE FOR RESIDUE PO4 B 264
12
BC3
SOFTWARE
GLU A:61 , THR A:88 , GLU B:162
BINDING SITE FOR RESIDUE PO4 A 265
13
BC4
SOFTWARE
ILE A:101 , ASP A:103 , SER A:104 , GLY A:105 , LYS A:131 , GLU A:151 , PHE A:152 , VAL A:153 , ASP A:159 , HOH A:201 , HOH A:238 , HOH A:256 , MG A:273
BINDING SITE FOR RESIDUE 5GP A 266
14
BC5
SOFTWARE
ASP B:100 , ILE B:101 , ASP B:103 , SER B:104 , GLY B:105 , LYS B:131 , GLU B:151 , PHE B:152 , VAL B:153 , LEU B:158 , ASP B:159 , HOH B:191 , HOH B:219 , HOH B:220 , PO4 B:259 , MG B:272
BINDING SITE FOR RESIDUE 5GP B 267
15
BC6
SOFTWARE
LYS A:19 , GLU A:22 , LEU A:23 , ILE A:26 , TYR A:143 , VAL A:144 , GLY A:145 , HOH A:207 , HOH A:208 , HOH A:231 , HOH A:246
BINDING SITE FOR RESIDUE SUC A 268
16
BC7
SOFTWARE
GLU B:7 , LYS B:32 , LYS B:174 , PRO B:175 , SER B:176
BINDING SITE FOR RESIDUE GOL B 269
17
BC8
SOFTWARE
LEU D:10 , GLY D:145 , PHE D:146 , THR D:147
BINDING SITE FOR RESIDUE SUC D 270
18
BC9
SOFTWARE
GLN C:15 , LYS C:19 , GLY C:145 , PHE C:146 , THR C:147
BINDING SITE FOR RESIDUE SUC C 271
19
CC1
SOFTWARE
SER B:104 , LEU B:106 , THR B:107 , 5GP B:267
BINDING SITE FOR RESIDUE MG B 272
20
CC2
SOFTWARE
SER A:104 , THR A:107 , 5GP A:266
BINDING SITE FOR RESIDUE MG A 273
21
CC3
SOFTWARE
LYS B:116
BINDING SITE FOR RESIDUE PO4 B 274
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3kb8a_ (A:)
1b: SCOP_d3kb8b_ (B:)
1c: SCOP_d3kb8c_ (C:)
1d: SCOP_d3kb8d_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Bacillus anthracis [TaxId: 261594]
(6)
1a
d3kb8a_
A:
1b
d3kb8b_
B:
1c
d3kb8c_
C:
1d
d3kb8d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (142 KB)
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