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3KAI
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
STRUCTURE-GUIDED DESIGN OF ALPHA-AMINO ACID-DERIVED PIN1 INHIBITORS
Authors
:
L. M. Baker, P. Dokurno, D. A. Robinson, A. E. Surgenor, J. B. Murray, A. J. Potter, J. D. Moore
Date
:
19 Oct 09 (Deposition) - 22 Dec 09 (Release) - 05 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sbdd, Ppiase, Isomerase, Rotamase, Small Molecule, Proline Directed Kinase, Cell Cycle, Oncogenic Transformation, Nucleus, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Potter, S. Ray, L. Gueritz, C. L. Nunns, C. J. Bryant, S. F. Scrace, N. Matassova, L. M. Baker, P. Dokurno, D. A. Robinson, A. E. Surgenor, B. Davis, J. B. Murray, C. M. Richardson, J. D. Moore
Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors
Bioorg. Med. Chem. Lett. V. 20 586 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
2a: (2R)-2-[(2-METHYL-5-PHENYL-PYRAZOL... (4FIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
1
Ligand/Ion
DODECAETHYLENE GLYCOL
2
4FI
1
Ligand/Ion
(2R)-2-[(2-METHYL-5-PHENYL-PYRAZOL-3-YL)CARBONYLAMINO]-3-NAPHTHALEN-2-YL-PROPANOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:23 , ASN A:30 , ALA A:31 , SER A:32 , TRP A:34 , ILE A:93 , LYS A:97 , SER A:98 , SER A:147 , GLY A:148 , HOH A:178 , HOH A:183 , HOH A:215
BINDING SITE FOR RESIDUE 12P A 164
2
AC2
SOFTWARE
HIS A:59 , LEU A:61 , LYS A:63 , ARG A:69 , CYS A:113 , SER A:114 , SER A:115 , ASP A:121 , LEU A:122 , GLN A:131 , PHE A:134 , SER A:154 , HOH A:204
BINDING SITE FOR RESIDUE 4FI A 165
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: WW_DOMAIN_1 (A:11-37)
2: PPIC_PPIASE_2 (A:52-163)
3: PPIC_PPIASE_1 (A:103-123)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WW_DOMAIN_1
PS01159
WW/rsp5/WWP domain signature.
PIN1_HUMAN
11-37
1
A:11-37
2
PPIC_PPIASE_2
PS50198
PpiC-type peptidyl-prolyl cis-trans isomerase family profile.
PIN1_HUMAN
52-163
1
A:52-163
3
PPIC_PPIASE_1
PS01096
PpiC-type peptidyl-prolyl cis-trans isomerase signature.
PIN1_HUMAN
103-123
1
A:103-123
[
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:7-20)
Exon 1.2 (A:20-91 (gaps))
Exon 1.3a (A:91-128)
Exon 1.4a (A:128-163)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.4a
5: Boundary 1.4a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000247970
1a
ENSE00000872705
chr19:
9945999-9946078
80
PIN1_HUMAN
1-20
20
1
A:7-20
14
1.2
ENST00000247970
2
ENSE00000872706
chr19:
9949112-9949324
213
PIN1_HUMAN
20-91
72
1
A:20-91 (gaps)
72
1.3a
ENST00000247970
3a
ENSE00000872707
chr19:
9958706-9958816
111
PIN1_HUMAN
91-128
38
1
A:91-128
38
1.4a
ENST00000247970
4a
ENSE00000872708
chr19:
9959766-9960358
593
PIN1_HUMAN
128-163
36
1
A:128-163
36
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3kaia1 (A:7-38)
2a: SCOP_d3kaia2 (A:51-163)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
WW domain-like
(101)
Superfamily
:
WW domain
(80)
Family
:
WW domain
(69)
Protein domain
:
Mitotic rotamase PIN1
(37)
Human (Homo sapiens) [TaxId: 9606]
(37)
1a
d3kaia1
A:7-38
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
Mitotic rotamase PIN1, domain 2
(36)
Human (Homo sapiens) [TaxId: 9606]
(35)
2a
d3kaia2
A:51-163
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3kaiA02 (A:54-163)
2a: CATH_3kaiA01 (A:7-37)
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.40, no name defined]
(98)
Human (Homo sapiens)
(72)
1a
3kaiA02
A:54-163
Class
:
Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
Ubiquitin Ligase Nedd4; Chain: W;
(40)
Homologous Superfamily
:
[code=2.20.70.10, no name defined]
(40)
Human (Homo sapiens)
(27)
2a
3kaiA01
A:7-37
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Rotamase_3kaiA01 (A:59-163)
2a: PFAM_WW_3kaiA02 (A:7-37)
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Clans
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)
Clan
:
FKBP
(43)
Family
:
Rotamase
(35)
Homo sapiens (Human)
(28)
1a
Rotamase-3kaiA01
A:59-163
Clan
:
no clan defined [family: WW]
(77)
Family
:
WW
(77)
Homo sapiens (Human)
(62)
2a
WW-3kaiA02
A:7-37
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (33 KB)
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