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3K9O
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF E2-25K AND UBB+1 COMPLEX
Authors
:
G. B. Kang, S. Ko, S. M. Song, W. Lee, S. H. Eom
Date
:
16 Oct 09 (Deposition) - 08 Sep 10 (Release) - 08 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
E2-25K, Ubb+1, Complex Structure, Atp-Binding, Isopeptide Bond, Ligase, Nucleotide-Binding, Ubl Conjugation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. B. Kang, S. Ko, S. M. Song, W. Lee, S. M. Eom
Structural Basis Of E2-25K/Ubb+1 Interaction For Neurotoxicity Of Alzheimer Disease By Proteasome Inhibition
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (-|-|-|-|-|-|-|-|B:1-75)
2: UBIQUITIN_CONJUGAT_2 (A:7-143)
3: UBIQUITIN_1 (-|-|-|-|-|-|-|-|B:27-52)
4: UBIQUITIN_CONJUGAT_1 (A:80-96)
5: UBA (A:160-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
B:1-75
2
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2K_HUMAN
7-143
1
A:7-143
3
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
B:27-52
4
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2K_HUMAN
80-96
1
A:80-96
5
UBA
PS50030
Ubiquitin-associated domain (UBA) profile.
UBE2K_HUMAN
160-200
1
A:160-200
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Exons
(8, 8)
Info
All Exons
Exon 1.1a (A:3-21)
Exon 1.2 (A:22-53)
Exon 1.3 (A:53-72)
Exon 1.4 (A:73-100)
Exon 1.5 (A:100-133)
Exon 1.6 (A:134-176)
Exon 1.7h (A:177-200)
Exon 2.2 (B:1-75)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7h
08: Boundary 1.7h/-
09: Boundary 2.1/2.2
10: Boundary 2.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261427
1a
ENSE00001368901
chr4:
39699664-39700010
347
UBE2K_HUMAN
1-21
21
1
A:3-21
19
1.2
ENST00000261427
2
ENSE00001504557
chr4:
39739040-39739133
94
UBE2K_HUMAN
22-53
32
1
A:22-53
32
1.3
ENST00000261427
3
ENSE00001504556
chr4:
39747372-39747430
59
UBE2K_HUMAN
53-72
20
1
A:53-72
20
1.4
ENST00000261427
4
ENSE00001077329
chr4:
39757277-39757359
83
UBE2K_HUMAN
73-100
28
1
A:73-100
28
1.5
ENST00000261427
5
ENSE00001077323
chr4:
39776454-39776553
100
UBE2K_HUMAN
100-133
34
1
A:100-133
34
1.6
ENST00000261427
6
ENSE00001077322
chr4:
39779302-39779430
129
UBE2K_HUMAN
134-176
43
1
A:134-176
43
1.7h
ENST00000261427
7h
ENSE00001077328
chr4:
39779980-39784412
4433
UBE2K_HUMAN
177-200
24
1
A:177-200
24
2.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
2.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
1
B:1-75
75
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3k9oa2 (A:157-200)
2a: SCOP_d3k9ob_ (B:)
3a: SCOP_d3k9oa1 (A:3-156)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
UBA-like
(64)
Family
:
UBA domain
(48)
Protein domain
:
Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3k9oa2
A:157-200
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
2a
d3k9ob_
B:
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
3a
d3k9oa1
A:3-156
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_UBA_3k9oA01 (A:161-197)
2a: PFAM_UQ_con_3k9oA02 (A:8-149)
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Clan
:
UBA
(32)
Family
:
UBA
(23)
Homo sapiens (Human)
(13)
1a
UBA-3k9oA01
A:161-197
Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
2a
UQ_con-3k9oA02
A:8-149
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