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3K9N
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
ALLOSTERIC MODULATION OF H-RAS GTPASE
Authors
:
S. Fetics, M. Young, G. Buhrman, C. Mattos
Date
:
16 Oct 09 (Deposition) - 02 Mar 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Nucleotide Complex, Acetylation, Cell Membrane, Disease Mutation, Golgi Apparatus, Gtp-Binding, Lipoprotein, Membrane, Methylation, Nucleotide-Binding, Palmitate, Prenylation, Proto- Oncogene, S-Nitrosylation, Oncoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Buhrman, G. Holzapfel, S. Fetics, C. Mattos
Allosteric Modulation Of Ras Positions Q61 For A Direct Role In Catalysis.
Proc. Natl. Acad. Sci. Usa V. 107 4931 2010
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:1 , GLY A:12 , GLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , ALA A:18 , PHE A:28 , ASP A:30 , GLU A:31 , GLY A:60 , ASN A:116 , LYS A:117 , ASP A:119 , LEU A:120 , SER A:145 , ALA A:146 , LYS A:147 , HOH A:171 , HOH A:177 , MG A:203
BINDING SITE FOR RESIDUE GNP A 201
2
AC2
SOFTWARE
ARG A:102 , ASP A:105 , HOH A:320 , HOH A:543
BINDING SITE FOR RESIDUE CA A 202
3
AC3
SOFTWARE
SER A:17 , HOH A:167 , HOH A:171 , GNP A:201 , HOH A:299
BINDING SITE FOR RESIDUE MG A 203
[
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SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_026106 (G12A, chain A, )
02: VAR_045975 (G12C, chain A, )
03: VAR_068816 (G12D, chain A, )
04: VAR_045976 (G12E, chain A, )
05: VAR_006837 (G12S, chain A, )
06: VAR_006836 (G12V, chain A, )
07: VAR_026107 (G13C, chain A, )
08: VAR_026108 (G13D, chain A, )
09: VAR_068817 (G13R, chain A, )
10: VAR_045977 (Q22K, chain A, )
11: VAR_045978 (T58I, chain A, )
12: VAR_045979 (Q61K, chain A, )
13: VAR_006838 (Q61L, chain A, )
14: VAR_045981 (K117R, chain A, )
15: VAR_045982 (A146T, chain A, )
16: VAR_045983 (A146V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026106
G
12
A
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
A
02
UniProt
VAR_045975
G
12
C
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
C
03
UniProt
VAR_068816
G
12
D
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
D
04
UniProt
VAR_045976
G
12
E
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
E
05
UniProt
VAR_006837
G
12
S
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
S
06
UniProt
VAR_006836
G
12
V
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
V
07
UniProt
VAR_026107
G
13
C
RASH_HUMAN
Disease (CSTLO)
---
A
G
13
C
08
UniProt
VAR_026108
G
13
D
RASH_HUMAN
Disease (CSTLO)
---
A
G
13
D
09
UniProt
VAR_068817
G
13
R
RASH_HUMAN
Disease (SFM)
---
A
G
13
R
10
UniProt
VAR_045977
Q
22
K
RASH_HUMAN
Disease (CMEMS)
---
A
Q
22
K
11
UniProt
VAR_045978
T
58
I
RASH_HUMAN
Disease (CSTLO)
---
A
T
58
I
12
UniProt
VAR_045979
Q
61
K
RASH_HUMAN
Unclassified
28933406
A
Q
61
K
13
UniProt
VAR_006838
Q
61
L
RASH_HUMAN
Unclassified
---
A
Q
61
L
14
UniProt
VAR_045981
K
117
R
RASH_HUMAN
Disease (CSTLO)
---
A
K
117
R
15
UniProt
VAR_045982
A
146
T
RASH_HUMAN
Disease (CSTLO)
---
A
A
146
T
16
UniProt
VAR_045983
A
146
V
RASH_HUMAN
Disease (CSTLO)
---
A
A
146
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAS (A:1-166)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RASH_HUMAN
1-188
1
A:1-166
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.5b (A:1-37)
Exon 1.6c (A:38-97 (gaps))
Exon 1.7a (A:97-150)
Exon 1.9d (A:151-166)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.5b
2: Boundary 1.5b/1.6c
3: Boundary 1.6c/1.7a
4: Boundary 1.7a/1.9d
5: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000397596
3
ENSE00001529352
chr11:
535339-535257
83
RASH_HUMAN
-
0
0
-
-
1.5b
ENST00000397596
5b
ENSE00002189675
chr11:
534375-534212
164
RASH_HUMAN
1-37
37
1
A:1-37
37
1.6c
ENST00000397596
6c
ENSE00001728710
chr11:
533944-533766
179
RASH_HUMAN
38-97
60
1
A:38-97 (gaps)
60
1.7a
ENST00000397596
7a
ENSE00001206466
chr11:
533612-533453
160
RASH_HUMAN
97-150
54
1
A:97-150
54
1.9d
ENST00000397596
9d
ENSE00001628271
chr11:
532755-532242
514
RASH_HUMAN
151-189
39
1
A:151-166
16
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3k9na_ (A:)
View:
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(
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Folds
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(
)
Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
cH-p21 Ras protein
(104)
Human (Homo sapiens) [TaxId: 9606]
(104)
1a
d3k9na_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ras_3k9nA01 (A:5-165)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-3k9nA01
A:5-165
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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