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3K9M
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
CATHEPSIN B IN COMPLEX WITH STEFIN A
Authors
:
M. Renko, D. Turk
Date
:
16 Oct 09 (Deposition) - 03 Nov 09 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Disulfide Bond, Glycoprotein, Lysosome, Protease, Thiol Protease, Zymogen, Thiol Protease Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Renko, U. Pozgan, D. Majera, D. Turk
Stefin A Displaces The Occluding Loop Of Cathepsin B Only B As Much As Required To Bind To The Active Site Cleft
Febs J. V. 277 4338 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051512 (P12L, chain A/B, )
2: VAR_048851 (T96M, chain C/D, )
3: VAR_014696 (S156N, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051512
P
91
L
CATB_HUMAN
Polymorphism
11548596
A/B
P
12
L
2
UniProt
VAR_048851
T
96
M
CYTA_HUMAN
Polymorphism
34173813
C/D
T
96
M
3
UniProt
VAR_014696
S
235
N
CATB_HUMAN
Polymorphism
17573
A/B
S
156
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CYSTATIN (C:45-58,D:45-58)
2: THIOL_PROTEASE_CYS (A:23-34,B:23-34)
3: THIOL_PROTEASE_HIS (A:197-207,B:197-207)
4: THIOL_PROTEASE_ASN (A:214-233,B:214-233)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTATIN
PS00287
Cysteine proteases inhibitors signature.
CYTA_HUMAN
45-58
2
C:45-58
D:45-58
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATB_HUMAN
102-113
2
A:23-34
B:23-34
3
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATB_HUMAN
276-286
2
A:197-207
B:197-207
4
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATB_HUMAN
293-312
2
A:214-233
B:214-233
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Exons
(10, 20)
Info
All Exons
Exon 1.1a (C:1-22 | D:1-22)
Exon 1.2a (C:23-56 | D:23-56)
Exon 1.3 (C:57-98 | D:57-98)
Exon 2.15e (A:1-30 | B:1-30)
Exon 2.17f (A:31-70 | B:31-70)
Exon 2.18h (A:70-99 | B:70-99)
Exon 2.19b (A:99-147 | B:99-147)
Exon 2.20d (A:147-186 | B:147-186)
Exon 2.21a (A:186-229 | B:186-229)
Exon 2.22h (A:229-254 | B:229-254)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.3
04: Boundary 1.3/-
05: Boundary 2.14b/2.15e
06: Boundary 2.15e/2.17f
07: Boundary 2.17f/2.18h
08: Boundary 2.18h/2.19b
09: Boundary 2.19b/2.20d
10: Boundary 2.20d/2.21a
11: Boundary 2.21a/2.22h
12: Boundary 2.22h/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264474
1a
ENSE00001154693
chr3:
122044091-122044205
115
CYTA_HUMAN
1-22
22
2
C:1-22
D:1-22
22
22
1.2a
ENST00000264474
2a
ENSE00001078746
chr3:
122056394-122056495
102
CYTA_HUMAN
23-56
34
2
C:23-56
D:23-56
34
34
1.3
ENST00000264474
3
ENSE00001154683
chr3:
122060286-122060819
534
CYTA_HUMAN
57-98
42
2
C:57-98
D:57-98
42
42
2.4a
ENST00000353047
4a
ENSE00001831074
chr8:
11725738-11725510
229
CATB_HUMAN
-
0
0
-
-
2.13e
ENST00000353047
13e
ENSE00002149435
chr8:
11710988-11710838
151
CATB_HUMAN
1-42
42
0
-
-
2.14b
ENST00000353047
14b
ENSE00002152237
chr8:
11710204-11710119
86
CATB_HUMAN
43-71
29
0
-
-
2.15e
ENST00000353047
15e
ENSE00001087019
chr8:
11708489-11708375
115
CATB_HUMAN
71-109
39
2
A:1-30
B:1-30
30
30
2.17f
ENST00000353047
17f
ENSE00002158636
chr8:
11706673-11706555
119
CATB_HUMAN
110-149
40
2
A:31-70
B:31-70
40
40
2.18h
ENST00000353047
18h
ENSE00001087012
chr8:
11705661-11705576
86
CATB_HUMAN
149-178
30
2
A:70-99
B:70-99
30
30
2.19b
ENST00000353047
19b
ENSE00001087016
chr8:
11705331-11705188
144
CATB_HUMAN
178-226
49
2
A:99-147
B:99-147
49
49
2.20d
ENST00000353047
20d
ENSE00001087013
chr8:
11704677-11704561
117
CATB_HUMAN
226-265
40
2
A:147-186
B:147-186
40
40
2.21a
ENST00000353047
21a
ENSE00001087015
chr8:
11703298-11703170
129
CATB_HUMAN
265-308
44
2
A:186-229
B:186-229
44
44
2.22h
ENST00000353047
22h
ENSE00002162645
chr8:
11702731-11700317
2415
CATB_HUMAN
308-339
32
2
A:229-254
B:229-254
26
26
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3k9mc_ (C:)
1b: SCOP_d3k9md_ (D:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Cystatins
(31)
Protein domain
:
Cystatin A (stefin A)
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d3k9mc_
C:
1b
d3k9md_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3k9mA00 (A:1-254)
1b: CATH_3k9mB00 (B:1-254)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
3k9mA00
A:1-254
1b
3k9mB00
B:1-254
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cystatin_3k9mD01 (D:4-92)
1b: PFAM_Cystatin_3k9mD02 (D:4-92)
2a: PFAM_Peptidase_C1_3k9mB01 (B:1-250)
2b: PFAM_Peptidase_C1_3k9mB02 (B:1-250)
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Clan
:
Cystatin
(20)
Family
:
Cystatin
(15)
Homo sapiens (Human)
(12)
1a
Cystatin-3k9mD01
D:4-92
1b
Cystatin-3k9mD02
D:4-92
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Homo sapiens (Human)
(45)
2a
Peptidase_C1-3k9mB01
B:1-250
2b
Peptidase_C1-3k9mB02
B:1-250
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Asym.Unit (119 KB)
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