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3K96
Asym. Unit
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Asym.Unit (123 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE (GPSA) FROM COXIELLA BURNETII
Authors
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, S. N. Pe W. F. Anderson, Center For Structural Genomics Of Infectious (Csgid)
Date
:
15 Oct 09 (Deposition) - 27 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycerol-3-Phosphate Dehydrogenase, Gpsa, Idp01976, Nad, Oxidoreductase, Phospholipid Biosynthesis, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid
(Keyword Search:
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Reference
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, S. N. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii.
To Be Published
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
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No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
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Sites
(3, 3)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:38 , ASP B:42 , CYS B:67
BINDING SITE FOR RESIDUE BME B 401
2
AC2
SOFTWARE
GLN B:45 , LYS B:64 , TYR B:66 , CYS B:67 , ASP B:68 , HOH B:481
BINDING SITE FOR RESIDUE EPE B 402
3
AC3
SOFTWARE
GLN A:45 , TYR A:66 , CYS A:67 , ASP A:68
BINDING SITE FOR RESIDUE EPE A 403
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NAD_G3PDH (A:189-210,B:189-210)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NAD_G3PDH
PS00957
NAD-dependent glycerol-3-phosphate dehydrogenase signature.
GPDA_COXBU
189-210
2
A:189-210
B:189-210
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3k96a2 (A:181-328)
1b: SCOP_d3k96b2 (B:181-327)
2a: SCOP_d3k96a1 (A:3-180)
2b: SCOP_d3k96b1 (B:3-180)
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Class
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All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Coxiella burnetii [TaxId: 227377]
(1)
1a
d3k96a2
A:181-328
1b
d3k96b2
B:181-327
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Coxiella burnetii [TaxId: 227377]
(1)
2a
d3k96a1
A:3-180
2b
d3k96b1
B:3-180
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3k96A02 (A:190-328)
1b: CATH_3k96B02 (B:190-327)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Coxiella burnetii rsa 493. Organism_taxid: 227377. Strain: rsa 493.
(1)
1a
3k96A02
A:190-328
1b
3k96B02
B:190-327
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NAD_Gly3P_dh_C_3k96B01 (B:180-324)
1b: PFAM_NAD_Gly3P_dh_C_3k96B02 (B:180-324)
2a: PFAM_NAD_Gly3P_dh_N_3k96B03 (B:7-162)
2b: PFAM_NAD_Gly3P_dh_N_3k96B04 (B:7-162)
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Clan
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6PGD_C
(47)
Family
:
NAD_Gly3P_dh_C
(11)
Coxiella burnetii
(1)
1a
NAD_Gly3P_dh_C-3k96B01
B:180-324
1b
NAD_Gly3P_dh_C-3k96B02
B:180-324
Clan
:
NADP_Rossmann
(1239)
Family
:
NAD_Gly3P_dh_N
(11)
Coxiella burnetii
(1)
2a
NAD_Gly3P_dh_N-3k96B03
B:7-162
2b
NAD_Gly3P_dh_N-3k96B04
B:7-162
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Asymmetric Unit 1
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