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3K8Z
Asym. Unit
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Asym.Unit (385 KB)
Biol.Unit 1 (378 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GUDB1 A DECRYPTIFIED SECONDARY GLUTAMATE DEHYDROGENASE FROM B. SUBTILIS
Authors
:
K. Gunka, J. A. Newman, F. M. Commichau, C. Herzberg, C. Rodrigues, L. He R. J. Lewis, J. Stulke
Date
:
15 Oct 09 (Deposition) - 02 Jun 10 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Gudb, Glutamate Dehydrogenase, Nad, Oxidoreductase
(Keyword Search:
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Reference
:
K. Gunka, J. A. Newman, F. M. Commichau, C. Herzberg, C. Rodrigues, L. Hewitt, R. J. Lewis, J. Stulke
Functional Dissection Of A Trigger Enzyme: Mutations Of The Bacillus Subtilis Glutamate Dehydrogenase Rocg That Affect Differentially Its Catalytic Activity And Regulatory Properties
J. Mol. Biol. V. 400 815 2010
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
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1: GLFV_DEHYDROGENASE (A:109-122,B:109-122,C:109-122,D:10...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
GUDB_BACSU
113-126
6
A:109-122
B:109-122
C:109-122
D:109-122
E:109-122
F:109-122
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3k8za1 (A:17-188)
1b: SCOP_d3k8ze1 (E:17-188)
1c: SCOP_d3k8zf1 (F:17-188)
1d: SCOP_d3k8zb1 (B:17-188)
1e: SCOP_d3k8zc1 (C:17-188)
1f: SCOP_d3k8zd1 (D:17-188)
2a: SCOP_d3k8za2 (A:189-423)
2b: SCOP_d3k8zb2 (B:189-423)
2c: SCOP_d3k8zc2 (C:189-423)
2d: SCOP_d3k8zd2 (D:189-423)
2e: SCOP_d3k8ze2 (E:189-423)
2f: SCOP_d3k8zf2 (F:189-423)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d3k8za1
A:17-188
1b
d3k8ze1
E:17-188
1c
d3k8zf1
F:17-188
1d
d3k8zb1
B:17-188
1e
d3k8zc1
C:17-188
1f
d3k8zd1
D:17-188
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Bacillus subtilis [TaxId: 1423]
(11)
2a
d3k8za2
A:189-423
2b
d3k8zb2
B:189-423
2c
d3k8zc2
C:189-423
2d
d3k8zd2
D:189-423
2e
d3k8ze2
E:189-423
2f
d3k8zf2
F:189-423
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CATH Domains
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Pfam Domains
(2, 12)
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all PFAM domains
1a: PFAM_ELFV_dehydrog_3k8zF01 (F:190-421)
1b: PFAM_ELFV_dehydrog_3k8zF02 (F:190-421)
1c: PFAM_ELFV_dehydrog_3k8zF03 (F:190-421)
1d: PFAM_ELFV_dehydrog_3k8zF04 (F:190-421)
1e: PFAM_ELFV_dehydrog_3k8zF05 (F:190-421)
1f: PFAM_ELFV_dehydrog_3k8zF06 (F:190-421)
2a: PFAM_ELFV_dehydrog_N_3k8zF07 (F:45-174)
2b: PFAM_ELFV_dehydrog_N_3k8zF08 (F:45-174)
2c: PFAM_ELFV_dehydrog_N_3k8zF09 (F:45-174)
2d: PFAM_ELFV_dehydrog_N_3k8zF10 (F:45-174)
2e: PFAM_ELFV_dehydrog_N_3k8zF11 (F:45-174)
2f: PFAM_ELFV_dehydrog_N_3k8zF12 (F:45-174)
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Clan
:
NADP_Rossmann
(1239)
Family
:
ELFV_dehydrog
(13)
Bacillus subtilis
(2)
1a
ELFV_dehydrog-3k8zF01
F:190-421
1b
ELFV_dehydrog-3k8zF02
F:190-421
1c
ELFV_dehydrog-3k8zF03
F:190-421
1d
ELFV_dehydrog-3k8zF04
F:190-421
1e
ELFV_dehydrog-3k8zF05
F:190-421
1f
ELFV_dehydrog-3k8zF06
F:190-421
Clan
:
no clan defined [family: ELFV_dehydrog_N]
(13)
Family
:
ELFV_dehydrog_N
(13)
Bacillus subtilis
(2)
2a
ELFV_dehydrog_N-3k8zF07
F:45-174
2b
ELFV_dehydrog_N-3k8zF08
F:45-174
2c
ELFV_dehydrog_N-3k8zF09
F:45-174
2d
ELFV_dehydrog_N-3k8zF10
F:45-174
2e
ELFV_dehydrog_N-3k8zF11
F:45-174
2f
ELFV_dehydrog_N-3k8zF12
F:45-174
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