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3K8B
Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TURKEY (MELEAGIRIS GALLOPOVA)HEMOGLOBIN AT 2.3 ANGSTROM
Authors
:
P. Ramesh, S. S. Sundaresan, M. N. Ponnuswamy
Date
:
14 Oct 09 (Deposition) - 22 Dec 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hemoglobin, Avian, Heme, Tetramer, Iron, Metal-Binding, Oxygen Transport, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Ramesh, S. S. Sundaresan, M. N. Ponnuswamy
Crystal Structure Of Turkey (Meleagiris Gallopova)Hemoglobin At 2. 3 Angstrom
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
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No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:42 , PHE A:43 , HIS A:45 , PHE A:46 , HIS A:58 , LYS A:61 , LEU A:83 , LEU A:86 , HIS A:87 , LEU A:91 , ASN A:97 , PHE A:98 , VAL A:132 , LEU A:136 , HOH A:287
BINDING SITE FOR RESIDUE HEM A 150
2
AC2
SOFTWARE
THR B:38 , PHE B:41 , PHE B:42 , HIS B:63 , LYS B:66 , LEU B:88 , HIS B:92 , LEU B:96 , ASN B:102 , PHE B:103 , VAL B:137 , LEU B:141 , HOH B:156 , HOH B:290
BINDING SITE FOR RESIDUE HEM B 150
3
AC3
SOFTWARE
TYR C:42 , PHE C:43 , HIS C:45 , PHE C:46 , HIS C:58 , LYS C:61 , ALA C:65 , LEU C:83 , LEU C:86 , HIS C:87 , LEU C:91 , ASN C:97 , PHE C:98 , LEU C:136 , HOH C:288
BINDING SITE FOR RESIDUE HEM C 150
4
AC4
SOFTWARE
THR D:38 , PHE D:41 , PHE D:42 , PHE D:45 , HIS D:63 , LYS D:66 , SER D:70 , PHE D:85 , LEU D:88 , HIS D:92 , LEU D:96 , VAL D:98 , ASN D:102 , PHE D:103 , HOH D:289
BINDING SITE FOR RESIDUE HEM D 150
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:2-141,C:2-141)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBA_MELGA
3-142
2
A:2-141
C:2-141
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3k8ba_ (A:)
1b: SCOP_d3k8bb_ (B:)
1c: SCOP_d3k8bc_ (C:)
1d: SCOP_d3k8bd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
automated matches
(99)
Turkey (Meleagris gallopavo) [TaxId: 9103]
(2)
1a
d3k8ba_
A:
1b
d3k8bb_
B:
1c
d3k8bc_
C:
1d
d3k8bd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3k8bB00 (B:1-146)
1b: CATH_3k8bD00 (D:1-146)
1c: CATH_3k8bA00 (A:1-141)
1d: CATH_3k8bC00 (C:1-141)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Common turkey (Meleagris gallopavo)
(2)
1a
3k8bB00
B:1-146
1b
3k8bD00
D:1-146
1c
3k8bA00
A:1-141
1d
3k8bC00
C:1-141
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Pfam Domains
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Asym.Unit (102 KB)
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