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3K75
Biol. Unit 2
Info
Asym.Unit (269 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (133 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF REDUCED XRCC1 BOUND TO DNA POL BETA CATALYTIC DOMAIN
Authors
:
M. J. Cuneo, R. E. London
Date
:
12 Oct 09 (Deposition) - 28 Apr 10 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : B,C,D,E
Biol. Unit 1: B,D (1x)
Biol. Unit 2: C,E (1x)
Keywords
:
Allosteric Disulfide, Xrcc1, Pol Beta, Dna Damage, Dna Repair, Nucleus, Phosphoprotein, Dna Replication, Dna Synthesis, Dna- Binding, Dna-Directed Dna Polymerase, Lyase, Magnesium, Metal- Binding, Methylation, Nucleotidyltransferase, Transferase, Dna- Binding Protein
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Reference
:
M. J. Cuneo, R. E. London
Oxidation State Of The Xrcc1 N-Terminal Domain Regulates Dn Polymerase Beta Binding Affinity.
Proc. Natl. Acad. Sci. Usa V. 107 6805 2010
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014773 (R7L, chain C, )
2: VAR_014774 (V10M, chain C, )
3: VAR_016168 (V72A, chain C, )
4: VAR_029228 (R107H, chain C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014773
R
7
L
XRCC1_HUMAN
Polymorphism
2307186
C
R
7
L
2
UniProt
VAR_014774
V
10
M
XRCC1_HUMAN
Polymorphism
2307171
C
V
10
M
3
UniProt
VAR_016168
V
72
A
XRCC1_HUMAN
Polymorphism
25496
C
V
72
A
4
UniProt
VAR_029228
R
107
H
XRCC1_HUMAN
Polymorphism
2228487
C
R
107
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_X (E:179-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_X
PS00522
DNA polymerase family X signature.
DPOLB_RAT
179-198
1
-
E:179-198
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3k75d1 (D:91-148)
1b: SCOP_d3k75e1 (E:93-148)
2a: SCOP_d3k75b_ (B:)
2b: SCOP_d3k75c_ (C:)
3a: SCOP_d3k75d2 (D:149-338)
3b: SCOP_d3k75e2 (E:149-335)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
PsbU/PolX domain-like
(218)
Family
:
DNA polymerase beta-like, second domain
(190)
Protein domain
:
DNA polymerase beta
(164)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(23)
1a
d3k75d1
D:91-148
1b
d3k75e1
E:93-148
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
N-terminal domain of xrcc1
(5)
Protein domain
:
N-terminal domain of xrcc1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d3k75b_
B:
2b
d3k75c_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
DNA polymerase beta-like
(218)
Protein domain
:
DNA polymerase beta, catalytic (31 kD) fragment
(164)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(23)
3a
d3k75d2
D:149-338
3b
d3k75e2
E:149-335
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_3k75D02 (D:149-265)
1b: CATH_3k75E02 (E:149-265)
2a: CATH_3k75E03 (E:266-335)
2b: CATH_3k75D03 (D:266-338)
3a: CATH_3k75D01 (D:91-148)
3b: CATH_3k75E01 (E:93-148)
4a: CATH_3k75B00 (B:2-153)
4b: CATH_3k75C00 (C:2-152)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta Polymerase; domain 2
(187)
Homologous Superfamily
:
Beta Polymerase, domain 2
(183)
Human (Homo sapiens)
(22)
1a
3k75D02
D:149-265
1b
3k75E02
E:149-265
Topology
:
Beta Polymerase; domain 3
(161)
Homologous Superfamily
:
Beta Polymerase, domain 3
(161)
Human (Homo sapiens)
(21)
2a
3k75E03
E:266-335
2b
3k75D03
D:266-338
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
Human (Homo sapiens)
(34)
3a
3k75D01
D:91-148
3b
3k75E01
E:93-148
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
4a
3k75B00
B:2-153
4b
3k75C00
C:2-152
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_XRCC1_N_3k75C01 (C:2-151)
1b: PFAM_XRCC1_N_3k75C02 (C:2-151)
2a: PFAM_DNA_pol_lambd_f_3k75E01 (E:97-148)
2b: PFAM_DNA_pol_lambd_f_3k75E02 (E:97-148)
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Clan
:
GBD
(153)
Family
:
XRCC1_N
(4)
Homo sapiens (Human)
(4)
1a
XRCC1_N-3k75C01
C:2-151
1b
XRCC1_N-3k75C02
C:2-151
Clan
:
no clan defined [family: DNA_pol_lambd_f]
(69)
Family
:
DNA_pol_lambd_f
(69)
Rattus norvegicus (Rat)
(11)
2a
DNA_pol_lambd_f-3k75E01
E:97-148
2b
DNA_pol_lambd_f-3k75E02
E:97-148
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Asymmetric Unit 1
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Asym.Unit (269 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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