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3K5K
Biol. Unit 3
Info
Asym.Unit (106 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (99 KB)
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(1)
Title
:
DISCOVERY OF A 2,4-DIAMINO-7-AMINOALKOXY-QUINAZOLINE AS A POTENT INHIBITOR OF HISTONE LYSINE METHYLTRANSFERASE, G9A
Authors
:
A. Dong, G. A. Wasney, F. Liu, X. Chen, A. Allali-Hassani, G. Senisterra C. Bountra, J. Weigelt, A. M. Edwards, C. H. Arrowsmith, S. V. Frye, A. B P. J. Brown, J. Jin, M. Vedadi
Date
:
07 Oct 09 (Deposition) - 10 Nov 09 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Histone Lysine Methyltransferase, G9A, Ank Repeat, Chromatin Regulator, Metal-Binding, Methyltransferase, Nucleus, Phosphoprotein, S-Adenosyl-L-Methionine, Transferase, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Liu, X. Chen, A. Allali-Hassani, A. M. Quinn, G. A. Wasney, A. Dong, D. Barsyte, I. Kozieradzki, G. Senisterra, I. Chau, A. Siarheyeva, D. B. Kireev, A. Jadhav, J. M. Herold, S. V. Frye, C. H. Arrowsmith, P. J. Brown, A. Simeonov, M. Vedadi, J. Jin
Discovery Of A 2, 4-Diamino-7-Aminoalkoxyquinazoline As A Potent And Selective Inhibitor Of Histone Lysine Methyltransferase G9A.
J. Med. Chem. V. 52 7950 2009
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 7-[3-(DIMETHYLAMINO)PROPOXY]-6-MET... (DXQa)
2b: 7-[3-(DIMETHYLAMINO)PROPOXY]-6-MET... (DXQb)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
3b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DXQ
2
Ligand/Ion
7-[3-(DIMETHYLAMINO)PROPOXY]-6-METHOXY-2-(4-METHYL-1,4-DIAZEPAN-1-YL)-N-(1-METHYLPIPERIDIN-4-YL)QUINAZOLIN-4-AMINE
3
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:974 , CYS A:987 , CYS A:1017 , CYS A:1021
BINDING SITE FOR RESIDUE ZN A 1194
02
AC2
SOFTWARE
CYS A:980 , CYS A:1017 , CYS A:1023 , CYS A:1027
BINDING SITE FOR RESIDUE ZN A 1195
03
AC3
SOFTWARE
CYS A:974 , CYS A:976 , CYS A:980 , CYS A:985
BINDING SITE FOR RESIDUE ZN A 1196
04
AC4
SOFTWARE
CYS A:1115 , CYS A:1168 , CYS A:1170 , CYS A:1175
BINDING SITE FOR RESIDUE ZN A 1197
05
AC5
SOFTWARE
HOH A:27 , HOH A:91 , HOH A:192 , HOH A:312 , MET A:1048 , TRP A:1050 , SER A:1084 , TYR A:1085 , ARG A:1109 , ASN A:1112 , HIS A:1113 , TYR A:1154 , PHE A:1158 , PHE A:1166 , THR A:1167 , CYS A:1168 , GLN A:1169
BINDING SITE FOR RESIDUE SAH A 1198
06
AC6
SOFTWARE
HOH A:453 , ASP A:1074 , ALA A:1077 , ASP A:1078 , ARG A:1080 , ASP A:1083 , SER A:1084 , LEU A:1086 , ASP A:1088 , CYS A:1098 , PHE A:1152 , TYR A:1154 , ARG A:1157 , PHE A:1158
BINDING SITE FOR RESIDUE DXQ A 2000
07
AC7
SOFTWARE
ASN A:963 , ARG A:1132
BINDING SITE FOR RESIDUE CL A 3001
08
AC8
SOFTWARE
CYS A:923 , ARG A:924
BINDING SITE FOR RESIDUE CL A 3004
09
AC9
SOFTWARE
CYS B:974 , CYS B:987 , CYS B:1017 , CYS B:1021
BINDING SITE FOR RESIDUE ZN B 1194
10
BC1
SOFTWARE
CYS B:980 , CYS B:1017 , CYS B:1023 , CYS B:1027
BINDING SITE FOR RESIDUE ZN B 1195
11
BC2
SOFTWARE
CYS B:974 , CYS B:976 , CYS B:980 , CYS B:985
BINDING SITE FOR RESIDUE ZN B 1196
12
BC3
SOFTWARE
CYS B:1115 , CYS B:1168 , CYS B:1170 , CYS B:1175
BINDING SITE FOR RESIDUE ZN B 1197
13
BC4
SOFTWARE
HOH B:128 , HOH B:225 , HOH B:232 , HOH B:336 , MET B:1048 , TRP B:1050 , SER B:1084 , TYR B:1085 , ARG B:1109 , PHE B:1110 , ASN B:1112 , HIS B:1113 , TYR B:1154 , PHE B:1158 , PHE B:1166 , THR B:1167 , CYS B:1168 , GLN B:1169
BINDING SITE FOR RESIDUE SAH B 1198
14
BC5
SOFTWARE
HOH B:324 , HOH B:344 , ASP B:1074 , ALA B:1077 , ASP B:1078 , ARG B:1080 , ASP B:1083 , SER B:1084 , LEU B:1086 , ASP B:1088 , CYS B:1098 , PHE B:1152 , TYR B:1154 , PHE B:1158
BINDING SITE FOR RESIDUE DXQ B 2001
15
BC6
SOFTWARE
THR A:961 , ASN A:963 , ASN B:963
BINDING SITE FOR RESIDUE CL B 3003
16
BC7
SOFTWARE
ARG B:924
BINDING SITE FOR RESIDUE CL B 3005
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_027974 (Y1165F, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027974
Y
1165
F
EHMT2_HUMAN
Polymorphism
13919
A/B
Y
1165
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PRE_SET (A:972-1035,B:972-1035)
2: SET (A:1038-1155,B:1038-1155)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRE_SET
PS50867
Pre-SET domain profile.
EHMT2_HUMAN
972-1035
2
A:972-1035
B:972-1035
2
SET
PS50280
SET domain profile.
EHMT2_HUMAN
1038-1155
2
A:1038-1155
B:1038-1155
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3k5ka_ (A:)
1b: SCOP_d3k5kb_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3k5ka_
A:
1b
d3k5kb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Pre_SET_3k5kB01 (B:925-1030)
1b: PFAM_Pre_SET_3k5kB02 (B:925-1030)
2a: PFAM_SET_3k5kB03 (B:1049-1155)
2b: PFAM_SET_3k5kB04 (B:1049-1155)
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Clan
:
no clan defined [family: Pre-SET]
(11)
Family
:
Pre-SET
(11)
Homo sapiens (Human)
(8)
1a
Pre-SET-3k5kB01
B:925-1030
1b
Pre-SET-3k5kB02
B:925-1030
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3k5kB03
B:1049-1155
2b
SET-3k5kB04
B:1049-1155
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Asymmetric Unit 1
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