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3K5I
Biol. Unit 2
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Asym.Unit (276 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE SYNTHASE FROM ASPERGILLUS CLAVATUS IN COMPLEX WITH ADP AND 5-AMINOIMADAZOLE RIBONUCLEOTIDE
Authors
:
J. B. Thoden, H. M. Holden, H. Paritala, S. M. Firestine
Date
:
07 Oct 09 (Deposition) - 20 Oct 09 (Release) - 02 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Purine Biosynthesis, Atp-Grasp, Lyase
(Keyword Search:
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Reference
:
J. B. Thoden, H. M. Holden, H. Paritala, S. M. Firestine
Structural And Functional Studies Of Aspergillus Clavatus N(5)-Carboxyaminoimidazole Ribonucleotide Synthetase
Biochemistry V. 49 752 2010
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: 5-AMINOIMIDAZOLE RIBONUCLEOTIDE (AIRa)
2b: 5-AMINOIMIDAZOLE RIBONUCLEOTIDE (AIRb)
2c: 5-AMINOIMIDAZOLE RIBONUCLEOTIDE (AIRc)
2d: 5-AMINOIMIDAZOLE RIBONUCLEOTIDE (AIRd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SODIUM ION (NAa)
5a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
5b: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
AIR
2
Ligand/Ion
5-AMINOIMIDAZOLE RIBONUCLEOTIDE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NHE
1
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC6 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC5 (SOFTWARE)
7: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
GLY C:154 , ARG C:155 , ASN C:157 , PHE C:158 , ARG C:159 , LEU C:173 , ASP C:213 , SER C:214 , HOH C:535
BINDING SITE FOR RESIDUE NHE C 384
2
BC1
SOFTWARE
LYS C:104 , LYS C:146 , ALA C:151 , TYR C:152 , ASP C:153 , GLY C:154 , ASN C:157 , GLU C:181 , LYS C:182 , TRP C:183 , ALA C:184 , PHE C:186 , GLU C:189 , GLN C:211 , SER C:214 , GLU C:254 , CYS C:266 , GLU C:267 , HOH C:385 , HOH C:386 , HOH C:388 , MG C:401 , HOH C:525 , HOH C:540 , HOH C:629
BINDING SITE FOR RESIDUE ADP C 400
3
BC2
SOFTWARE
GLU C:254 , GLU C:267 , HOH C:385 , HOH C:386 , ADP C:400
BINDING SITE FOR RESIDUE MG C 401
4
BC3
SOFTWARE
GLY C:13 , GLN C:14 , LEU C:15 , GLU C:73 , TYR C:152 , ASP C:153 , ARG C:155 , ARG C:271 , LYS C:345 , ARG C:352 , HOH C:404 , HOH C:520 , HOH C:542 , HOH C:547 , HOH C:622 , HOH C:630
BINDING SITE FOR RESIDUE AIR C 402
5
BC4
SOFTWARE
LYS D:104 , MET D:144 , LYS D:146 , ASN D:157 , GLU D:181 , LYS D:182 , TRP D:183 , ALA D:184 , PHE D:186 , GLU D:189 , GLU D:254 , CYS D:266 , GLU D:267 , HOH D:393 , HOH D:395 , MG D:401 , HOH D:510 , HOH D:520 , HOH D:543 , HOH D:619
BINDING SITE FOR RESIDUE ADP D 400
6
BC5
SOFTWARE
GLU D:254 , GLU D:267 , HOH D:393 , HOH D:395 , ADP D:400
BINDING SITE FOR RESIDUE MG D 401
7
BC6
SOFTWARE
GLY D:13 , GLN D:14 , LEU D:15 , GLU D:73 , ILE D:74 , ARG D:271 , LYS D:345 , ARG D:352 , HOH D:490 , HOH D:499
BINDING SITE FOR RESIDUE AIR D 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_ATP_grasp_3k5iD01 (D:111-283)
1b: PFAM_ATP_grasp_3k5iD02 (D:111-283)
1c: PFAM_ATP_grasp_3k5iD03 (D:111-283)
1d: PFAM_ATP_grasp_3k5iD04 (D:111-283)
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Clans
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)
Clan
:
ATP-grasp
(83)
Family
:
ATP-grasp
(3)
Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
(2)
1a
ATP-grasp-3k5iD01
D:111-283
1b
ATP-grasp-3k5iD02
D:111-283
1c
ATP-grasp-3k5iD03
D:111-283
1d
ATP-grasp-3k5iD04
D:111-283
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Asymmetric Unit 1
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Asym.Unit (276 KB)
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