PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3K5E
Biol. Unit 2
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (116 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE STRUCTURE OF HUMAN KINESIN-LIKE MOTOR PROTEIN KIF11/KSP/EG5 IN COMPLEX WITH ADP AND ENASTROL.
Authors
:
L. Crawley, R. K. Y. Cheng, M. Wood, J. Barker, B. Felicetti, M. Whittaker
Date
:
07 Oct 09 (Deposition) - 20 Oct 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Motor Protein, Nucleotide Binding. , Atp-Binding, Cell Cycle, Cell Division, Coiled Coil, Microtubule, Mitosis, Nucleotide-Binding, Phosphoprotein, Polymorphism, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Crawley, R. K. Y. Cheng, M. Wood, J. Barker, B. Felicetti, M. Whittaker
The Structure Of Human Kinesin-Like Motor Protein Kif11/Ksp/Eg5 In Complex With Adp And Enastrol.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: (4S,5R)-5-HYDROXY-4-(3-HYDROXYPHEN... (K5Ea)
2b: (4S,5R)-5-HYDROXY-4-(3-HYDROXYPHEN... (K5Eb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
K5E
2
Ligand/Ion
(4S,5R)-5-HYDROXY-4-(3-HYDROXYPHENYL)-3,4,5,6,7,8-HEXAHYDROQUINAZOLINE-2(1H)-THIONE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:116 , GLY A:117 , GLU A:118 , ARG A:119 , TRP A:127 , ASP A:130 , ALA A:133 , ILE A:136 , PRO A:137 , LEU A:214 , HOH A:440
BINDING SITE FOR RESIDUE K5E A 369
2
AC2
SOFTWARE
ARG A:24 , PRO A:27 , GLN A:106 , THR A:107 , GLY A:108 , THR A:109 , GLY A:110 , LYS A:111 , THR A:112 , PHE A:113 , GLU A:118 , HOH A:425 , HOH A:441 , HOH A:450 , HOH A:525 , HOH A:534 , HOH A:554 , MG A:604
BINDING SITE FOR RESIDUE ADP A 603
3
AC3
SOFTWARE
THR A:112 , HOH A:425 , HOH A:441 , HOH A:442 , HOH A:494 , ADP A:603
BINDING SITE FOR RESIDUE MG A 604
4
AC4
SOFTWARE
GLU B:116 , GLY B:117 , GLU B:118 , ARG B:119 , TRP B:127 , ASP B:130 , ALA B:133 , ILE B:136 , PRO B:137 , LEU B:214 , HOH B:383
BINDING SITE FOR RESIDUE K5E B 369
5
AC5
SOFTWARE
ARG B:24 , ARG B:26 , PRO B:27 , GLN B:106 , THR B:107 , GLY B:108 , THR B:109 , GLY B:110 , LYS B:111 , THR B:112 , PHE B:113 , GLU B:118 , HOH B:397 , HOH B:428 , HOH B:443 , HOH B:444 , HOH B:445 , HOH B:480 , HOH B:541 , MG B:606
BINDING SITE FOR RESIDUE ADP B 605
6
AC6
SOFTWARE
THR B:112 , HOH B:397 , HOH B:443 , HOH B:444 , HOH B:529 , ADP B:605
BINDING SITE FOR RESIDUE MG B 606
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_067829 (F144L, chain A/B, )
2: VAR_067830 (R234C, chain A/B, )
3: VAR_067831 (S235C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067829
F
144
L
KIF11_HUMAN
Disease (MCLMR)
---
A/B
F
144
L
2
UniProt
VAR_067830
R
234
C
KIF11_HUMAN
Disease (MCLMR)
---
A/B
R
234
C
3
UniProt
VAR_067831
S
235
C
KIF11_HUMAN
Disease (MCLMR)
---
A/B
S
235
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:18-359,B:18-359)
2: KINESIN_MOTOR_1 (A:259-270,B:259-270)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF11_HUMAN
18-359
2
A:18-359
B:18-359
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF11_HUMAN
259-270
2
A:259-270
B:259-270
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3k5ea_ (A:)
1b: SCOP_d3k5eb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Motor proteins
(119)
Protein domain
:
automated matches
(40)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3k5ea_
A:
1b
d3k5eb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Kinesin_3k5eB01 (B:24-359)
1b: PFAM_Kinesin_3k5eB02 (B:24-359)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Kinesin
(42)
Homo sapiens (Human)
(23)
1a
Kinesin-3k5eB01
B:24-359
1b
Kinesin-3k5eB02
B:24-359
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3K5E
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help