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3K54
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
STRUCTURES OF HUMAN BRUTON'S TYROSINE KINASE IN ACTIVE AND INACTIVE CONFORMATIONS SUGGESTS A MECHANISM OF ACTIVATION FOR TEC FAMILY KINASES.
Authors
:
D. J. Marcotte, Y. -T. Liu, R. M. Arduini, C. A. Hession, K. Miatkowski, C. P. Wildes, P. F. Cullen, B. T. Hopkins, E. Mertsching, T. J. Jenkins, M. J. Romanowski, D. P. Baker, L. F. Silvian
Date
:
06 Oct 09 (Deposition) - 19 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bruton'S Tyrosine Kinase, Btk, Dasatinib, Atp-Binding, Disease Mutation, Kinase, Membrane, Metal-Binding, Nucleotide-Binding, Nucleus, Phosphoprotein, Transferase, Tyrosine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Marcotte, Y. T. Liu, R. M. Arduini, C. A. Hession, K. Miatkowski, C. P. Wildes, P. F. Cullen, V. Hong, B. T. Hopkins, E. Mertsching, T. J. Jenkins, M. J. Romanowski, D. P. Baker, L. F. Silvian
Structures Of Human Bruton'S Tyrosine Kinase In Active And Inactive Conformations Suggest A Mechanism Of Activation Fo Tec Family Kinases.
Protein Sci. V. 19 429 2010
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-(2-CHLORO-6-METHYLPHENYL)-2-({6-... (1N1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1N1
1
Ligand/Ion
N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:428 , LYS A:430 , GLU A:445 , ILE A:472 , THR A:474 , GLU A:475 , TYR A:476 , MET A:477 , ALA A:478 , GLY A:480 , LEU A:528 , SER A:538
BINDING SITE FOR RESIDUE 1N1 A 1
[
close Site info
]
SAPs(SNPs)/Variants
(65, 65)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006239 (L408P, chain A, )
02: VAR_008313 (G414R, chain A, )
03: VAR_006240 (Y418H, chain A, )
04: VAR_006241 (I429N, chain A, )
05: VAR_006242 (K430E, chain A, )
06: VAR_008314 (K430R, chain A, )
07: VAR_008315 (E445D, chain A, )
08: VAR_008316 (G462D, chain A, )
09: VAR_008317 (G462V, chain A, )
10: VAR_006243 (Y476D, chain A, )
11: VAR_006244 (M477R, chain A, )
12: VAR_006245 (C502F, chain A, )
13: VAR_006246 (C502W, chain A, )
14: VAR_006247 (C506R, chain A, )
15: VAR_006248 (C506Y, chain A, )
16: VAR_008318 (A508D, chain A, )
17: VAR_008319 (M509I, chain A, )
18: VAR_006249 (M509V, chain A, )
19: VAR_008961 (L512P, chain A, )
20: VAR_008962 (L512Q, chain A, )
21: VAR_008320 (L518R, chain A, )
22: VAR_006251 (R520Q, chain A, )
23: VAR_008321 (D521G, chain A, )
24: VAR_006252 (D521H, chain A, )
25: VAR_006253 (D521N, chain A, )
26: VAR_008322 (A523E, chain A, )
27: VAR_008323 (R525G, chain A, )
28: VAR_006254 (R525P, chain A, )
29: VAR_006255 (R525Q, chain A, )
30: VAR_006256 (N526K, chain A, )
31: VAR_008324 (V535F, chain A, )
32: VAR_008325 (F559S, chain A, )
33: VAR_006259 (R562P, chain A, )
34: VAR_006260 (R562W, chain A, )
35: VAR_008326 (W563L, chain A, )
36: VAR_006261 (E567K, chain A, )
37: VAR_008964 (S578Y, chain A, )
38: VAR_006262 (W581R, chain A, )
39: VAR_006263 (A582V, chain A, )
40: VAR_008327 (F583S, chain A, )
41: VAR_006264 (M587L, chain A, )
42: VAR_008328 (E589D, chain A, )
43: VAR_006265 (E589G, chain A, )
44: VAR_008965 (E589K, chain A, )
45: VAR_006267 (S592P, chain A, )
46: VAR_006268 (G594E, chain A, )
47: VAR_006269 (G594R, chain A, )
48: VAR_006270 (Y598C, chain A, )
49: VAR_006271 (A607D, chain A, )
50: VAR_006272 (G613D, chain A, )
51: VAR_008330 (P619A, chain A, )
52: VAR_006273 (P619S, chain A, )
53: VAR_008331 (P619T, chain A, )
54: VAR_008332 (A622P, chain A, )
55: VAR_008333 (V626G, chain A, )
56: VAR_006274 (M630I, chain A, )
57: VAR_006275 (M630K, chain A, )
58: VAR_008334 (M630T, chain A, )
59: VAR_006276 (C633Y, chain A, )
60: VAR_006277 (R641C, chain A, )
61: VAR_006278 (R641H, chain A, )
62: VAR_008335 (F644L, chain A, )
63: VAR_006279 (F644S, chain A, )
64: VAR_006280 (L647P, chain A, )
65: VAR_006281 (L652P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006239
L
408
P
BTK_HUMAN
Disease (XLA)
---
A
L
408
P
02
UniProt
VAR_008313
G
414
R
BTK_HUMAN
Disease (XLA)
---
A
G
414
R
03
UniProt
VAR_006240
Y
418
H
BTK_HUMAN
Disease (XLA)
---
A
Y
418
H
04
UniProt
VAR_006241
I
429
N
BTK_HUMAN
Disease (XLA)
---
A
I
429
N
05
UniProt
VAR_006242
K
430
E
BTK_HUMAN
Disease (XLA)
---
A
K
430
E
06
UniProt
VAR_008314
K
430
R
BTK_HUMAN
Disease (XLA)
---
A
K
430
R
07
UniProt
VAR_008315
E
445
D
BTK_HUMAN
Disease (XLA)
---
A
E
445
D
08
UniProt
VAR_008316
G
462
D
BTK_HUMAN
Disease (XLA)
---
A
G
462
D
09
UniProt
VAR_008317
G
462
V
BTK_HUMAN
Disease (XLA)
---
A
G
462
V
10
UniProt
VAR_006243
Y
476
D
BTK_HUMAN
Disease (XLA)
---
A
Y
476
D
11
UniProt
VAR_006244
M
477
R
BTK_HUMAN
Disease (XLA)
---
A
M
477
R
12
UniProt
VAR_006245
C
502
F
BTK_HUMAN
Disease (XLA)
---
A
C
502
F
13
UniProt
VAR_006246
C
502
W
BTK_HUMAN
Disease (XLA)
---
A
C
502
W
14
UniProt
VAR_006247
C
506
R
BTK_HUMAN
Disease (XLA)
---
A
C
506
R
15
UniProt
VAR_006248
C
506
Y
BTK_HUMAN
Disease (XLA)
---
A
C
506
Y
16
UniProt
VAR_008318
A
508
D
BTK_HUMAN
Disease (XLA)
---
A
A
508
D
17
UniProt
VAR_008319
M
509
I
BTK_HUMAN
Disease (XLA)
---
A
M
509
I
18
UniProt
VAR_006249
M
509
V
BTK_HUMAN
Disease (XLA)
---
A
M
509
V
19
UniProt
VAR_008961
L
512
P
BTK_HUMAN
Disease (XLA)
---
A
L
512
P
20
UniProt
VAR_008962
L
512
Q
BTK_HUMAN
Disease (XLA)
---
A
L
512
Q
21
UniProt
VAR_008320
L
518
R
BTK_HUMAN
Disease (XLA)
---
A
L
518
R
22
UniProt
VAR_006251
R
520
Q
BTK_HUMAN
Disease (XLA)
---
A
R
520
Q
23
UniProt
VAR_008321
D
521
G
BTK_HUMAN
Disease (XLA)
---
A
D
521
G
24
UniProt
VAR_006252
D
521
H
BTK_HUMAN
Disease (XLA)
---
A
D
521
H
25
UniProt
VAR_006253
D
521
N
BTK_HUMAN
Disease (XLA)
---
A
D
521
N
26
UniProt
VAR_008322
A
523
E
BTK_HUMAN
Disease (XLA)
---
A
A
523
E
27
UniProt
VAR_008323
R
525
G
BTK_HUMAN
Disease (XLA)
---
A
R
525
G
28
UniProt
VAR_006254
R
525
P
BTK_HUMAN
Disease (XLA)
---
A
R
525
P
29
UniProt
VAR_006255
R
525
Q
BTK_HUMAN
Disease (XLA)
---
A
R
525
Q
30
UniProt
VAR_006256
N
526
K
BTK_HUMAN
Disease (XLA)
---
A
N
526
K
31
UniProt
VAR_008324
V
535
F
BTK_HUMAN
Disease (XLA)
---
A
V
535
F
32
UniProt
VAR_008325
F
559
S
BTK_HUMAN
Disease (XLA)
---
A
F
559
S
33
UniProt
VAR_006259
R
562
P
BTK_HUMAN
Disease (XLA)
28935176
A
R
562
P
34
UniProt
VAR_006260
R
562
W
BTK_HUMAN
Disease (XLA)
---
A
R
562
W
35
UniProt
VAR_008326
W
563
L
BTK_HUMAN
Disease (XLA)
---
A
W
563
L
36
UniProt
VAR_006261
E
567
K
BTK_HUMAN
Disease (XLA)
---
A
E
567
K
37
UniProt
VAR_008964
S
578
Y
BTK_HUMAN
Disease (XLA)
---
A
S
578
Y
38
UniProt
VAR_006262
W
581
R
BTK_HUMAN
Disease (XLA)
---
A
W
581
R
39
UniProt
VAR_006263
A
582
V
BTK_HUMAN
Disease (XLA)
---
A
A
582
V
40
UniProt
VAR_008327
F
583
S
BTK_HUMAN
Disease (XLA)
---
A
F
583
S
41
UniProt
VAR_006264
M
587
L
BTK_HUMAN
Disease (XLA)
---
A
M
587
L
42
UniProt
VAR_008328
E
589
D
BTK_HUMAN
Disease (XLA)
---
A
E
589
D
43
UniProt
VAR_006265
E
589
G
BTK_HUMAN
Disease (XLA)
---
A
E
589
G
44
UniProt
VAR_008965
E
589
K
BTK_HUMAN
Disease (XLA)
---
A
E
589
K
45
UniProt
VAR_006267
S
592
P
BTK_HUMAN
Disease (XLA)
---
A
S
592
P
46
UniProt
VAR_006268
G
594
E
BTK_HUMAN
Disease (XLA)
---
A
G
594
E
47
UniProt
VAR_006269
G
594
R
BTK_HUMAN
Disease (XLA)
---
A
G
594
R
48
UniProt
VAR_006270
Y
598
C
BTK_HUMAN
Disease (XLA)
---
A
Y
598
C
49
UniProt
VAR_006271
A
607
D
BTK_HUMAN
Disease (XLA)
---
A
A
607
D
50
UniProt
VAR_006272
G
613
D
BTK_HUMAN
Disease (XLA)
---
A
G
613
D
51
UniProt
VAR_008330
P
619
A
BTK_HUMAN
Disease (XLA)
---
A
P
619
A
52
UniProt
VAR_006273
P
619
S
BTK_HUMAN
Disease (XLA)
---
A
P
619
S
53
UniProt
VAR_008331
P
619
T
BTK_HUMAN
Disease (XLA)
---
A
P
619
T
54
UniProt
VAR_008332
A
622
P
BTK_HUMAN
Disease (XLA)
---
A
A
622
P
55
UniProt
VAR_008333
V
626
G
BTK_HUMAN
Disease (XLA)
---
A
V
626
G
56
UniProt
VAR_006274
M
630
I
BTK_HUMAN
Polymorphism
---
A
M
630
I
57
UniProt
VAR_006275
M
630
K
BTK_HUMAN
Disease (XLA)
---
A
M
630
K
58
UniProt
VAR_008334
M
630
T
BTK_HUMAN
Disease (XLA)
---
A
M
630
T
59
UniProt
VAR_006276
C
633
Y
BTK_HUMAN
Disease (XLA)
---
A
C
633
Y
60
UniProt
VAR_006277
R
641
C
BTK_HUMAN
Disease (XLA)
---
A
R
641
C
61
UniProt
VAR_006278
R
641
H
BTK_HUMAN
Disease (XLA)
---
A
R
641
H
62
UniProt
VAR_008335
F
644
L
BTK_HUMAN
Disease (XLA)
---
A
F
644
L
63
UniProt
VAR_006279
F
644
S
BTK_HUMAN
Disease (XLA)
---
A
F
644
S
64
UniProt
VAR_006280
L
647
P
BTK_HUMAN
Disease (XLA)
---
A
L
647
P
65
UniProt
VAR_006281
L
652
P
BTK_HUMAN
Disease (XLA)
---
A
L
652
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:408-430)
2: PROTEIN_KINASE_TYR (A:517-529)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
BTK_HUMAN
408-430
1
A:408-430
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
BTK_HUMAN
517-529
1
A:517-529
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.14b (A:392-393)
Exon 1.15a (A:393-450 (gaps))
Exon 1.16b (A:450-522)
Exon 1.17 (A:523-541)
Exon 1.18b (A:559-584)
Exon 1.19b (A:584-636)
Exon 1.20b (A:637-658)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13b/1.14b
2: Boundary 1.14b/1.15a
3: Boundary 1.15a/1.16b
4: Boundary 1.16b/1.17
5: Boundary 1.17/1.18b
6: Boundary 1.18b/1.19b
7: Boundary 1.19b/1.20b
8: Boundary 1.20b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308731
1b
ENSE00001821870
X:100641183-100641050
134
BTK_HUMAN
-
0
0
-
-
1.3
ENST00000308731
3
ENSE00002149458
X:100630302-100630132
171
BTK_HUMAN
1-47
47
0
-
-
1.4a
ENST00000308731
4a
ENSE00001643950
X:100629622-100629524
99
BTK_HUMAN
48-80
33
0
-
-
1.5
ENST00000308731
5
ENSE00001646803
X:100626689-100626621
69
BTK_HUMAN
81-103
23
0
-
-
1.6
ENST00000308731
6
ENSE00001698702
X:100625067-100624986
82
BTK_HUMAN
104-131
28
0
-
-
1.7b
ENST00000308731
7b
ENSE00001643964
X:100617677-100617549
129
BTK_HUMAN
131-174
44
0
-
-
1.8b
ENST00000308731
8b
ENSE00001601394
X:100617228-100617161
68
BTK_HUMAN
174-196
23
0
-
-
1.9
ENST00000308731
9
ENSE00001608013
X:100615743-100615556
188
BTK_HUMAN
197-259
63
0
-
-
1.10
ENST00000308731
10
ENSE00001712685
X:100615138-100615076
63
BTK_HUMAN
259-280
22
0
-
-
1.11
ENST00000308731
11
ENSE00001801955
X:100614335-100614281
55
BTK_HUMAN
280-298
19
0
-
-
1.12
ENST00000308731
12
ENSE00000673984
X:100613684-100613605
80
BTK_HUMAN
299-325
27
0
-
-
1.13b
ENST00000308731
13b
ENSE00000673983
X:100613425-100613298
128
BTK_HUMAN
325-368
44
0
-
-
1.14b
ENST00000308731
14b
ENSE00000673982
X:100612571-100612497
75
BTK_HUMAN
368-393
26
1
A:392-393
2
1.15a
ENST00000308731
15a
ENSE00000673981
X:100611943-100611772
172
BTK_HUMAN
393-450
58
1
A:393-450 (gaps)
58
1.16b
ENST00000308731
16b
ENSE00000673980
X:100611256-100611040
217
BTK_HUMAN
450-522
73
1
A:450-522
73
1.17
ENST00000308731
17
ENSE00000673977
X:100609682-100609618
65
BTK_HUMAN
523-544
22
1
A:523-541
19
1.18b
ENST00000308731
18b
ENSE00001780523
X:100608976-100608858
119
BTK_HUMAN
544-584
41
1
A:559-584
26
1.19b
ENST00000308731
19b
ENSE00001702496
X:100608339-100608182
158
BTK_HUMAN
584-636
53
1
A:584-636
53
1.20b
ENST00000308731
20b
ENSE00001855631
X:100604944-100604438
507
BTK_HUMAN
637-659
23
1
A:637-658
22
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3k54a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3k54a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3k54A01 (A:402-651)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3k54A01
A:402-651
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Asymmetric Unit 1
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