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3K4M
Asym. Unit
Info
Asym.Unit (799 KB)
Biol.Unit 1 (395 KB)
Biol.Unit 2 (393 KB)
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(1)
Title
:
PYRANOSE 2-OXIDASE Y456W MUTANT IN COMPLEX WITH 2FG
Authors
:
C. Divne, T. C. Tan
Date
:
05 Oct 09 (Deposition) - 12 May 10 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Gmc Oxidoreductase, Y456W Mutant, Rossmann Fold, Phbh Fold, Homotetramer, 8-Alpha-(N3) Histidyl Flavinylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Spadiut, T. C. Tan, I. Pisanelli, D. Haltrich, C. Divne
Importance Of The Gating Segment In The Substrate-Recognition Loop Of Pyranose 2-Oxidase.
Febs J. V. 277 2892 2010
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
2d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
2e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
2f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
2g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
2h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
3a: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGa)
3b: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGb)
3c: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGc)
3d: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGd)
3e: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGe)
3f: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGf)
3g: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGg)
3h: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MES
8
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
SHG
8
Ligand/Ion
2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:53 , GLY A:55 , PRO A:56 , ILE A:57 , ASP A:76 , ILE A:77 , THR A:158 , ARG A:159 , VAL A:160 , GLY A:163 , MET A:164 , HIS A:167 , TRP A:168 , THR A:169 , CYS A:170 , ALA A:171 , VAL A:281 , CYS A:283 , THR A:319 , ALA A:320 , HIS A:324 , LEU A:547 , ASN A:593 , THR A:595 , SHG A:901 , HOH A:1024 , HOH A:1047 , HOH A:1071 , HOH A:1117 , HOH A:1141 , HOH A:1284 , HOH A:1341 , HOH A:2587
BINDING SITE FOR RESIDUE FAD A 801
02
AC2
SOFTWARE
THR A:169 , GLN A:448 , HIS A:450 , ASP A:452 , ARG A:472 , VAL A:546 , HIS A:548 , ASN A:593 , FAD A:801
BINDING SITE FOR RESIDUE SHG A 901
03
AC3
SOFTWARE
LEU A:121 , VAL A:123 , TRP A:131 , GLN A:132 , ALA A:133 , PHE A:137 , ARG A:139 , SER B:462 , ILE B:463 , ASP B:464
BINDING SITE FOR RESIDUE MES A 902
04
AC4
SOFTWARE
GLY B:53 , GLY B:55 , PRO B:56 , ILE B:57 , ASP B:76 , ILE B:77 , THR B:158 , ARG B:159 , VAL B:160 , GLY B:163 , MET B:164 , HIS B:167 , TRP B:168 , THR B:169 , CYS B:170 , ALA B:171 , VAL B:281 , CYS B:283 , THR B:319 , ALA B:320 , HIS B:324 , LEU B:547 , ASN B:593 , THR B:595 , SHG B:901 , HOH B:1009 , HOH B:1053 , HOH B:1196 , HOH B:1502 , HOH B:1527 , HOH B:1578 , HOH B:1901 , HOH B:2627
BINDING SITE FOR RESIDUE FAD B 801
05
AC5
SOFTWARE
THR B:169 , GLN B:448 , HIS B:450 , ASP B:452 , ARG B:472 , VAL B:546 , HIS B:548 , ASN B:593 , FAD B:801 , HOH B:1692
BINDING SITE FOR RESIDUE SHG B 901
06
AC6
SOFTWARE
SER A:462 , ILE A:463 , ASP A:464 , LEU A:467 , LEU B:121 , VAL B:123 , ALA B:133 , PHE B:136 , PHE B:137 , LEU C:149
BINDING SITE FOR RESIDUE MES B 902
07
AC7
SOFTWARE
VAL C:52 , GLY C:53 , GLY C:55 , PRO C:56 , ILE C:57 , ASP C:76 , ILE C:77 , THR C:158 , ARG C:159 , VAL C:160 , GLY C:163 , MET C:164 , HIS C:167 , TRP C:168 , THR C:169 , CYS C:170 , ALA C:171 , VAL C:281 , CYS C:283 , THR C:319 , ALA C:320 , HIS C:324 , LEU C:547 , ASN C:593 , THR C:595 , SHG C:901 , HOH C:1151 , HOH C:1464 , HOH C:1473 , HOH C:1592 , HOH C:1731 , HOH C:2093 , HOH C:2565
BINDING SITE FOR RESIDUE FAD C 801
08
AC8
SOFTWARE
THR C:169 , GLN C:448 , HIS C:450 , ASP C:452 , ARG C:472 , VAL C:546 , HIS C:548 , ASN C:593 , FAD C:801 , HOH C:2313
BINDING SITE FOR RESIDUE SHG C 901
09
AC9
SOFTWARE
LEU B:149 , LEU C:121 , VAL C:123 , TRP C:131 , ALA C:133 , PHE C:136 , PHE C:137 , ARG C:139 , SER D:462 , ILE D:463 , ASP D:464
BINDING SITE FOR RESIDUE MES C 902
10
BC1
SOFTWARE
LEU A:149 , SER C:462 , ILE C:463 , ASP C:464 , LEU D:121 , VAL D:123 , TRP D:131 , ALA D:133 , PHE D:137
BINDING SITE FOR RESIDUE MES C 624
11
BC2
SOFTWARE
VAL D:52 , GLY D:53 , GLY D:55 , PRO D:56 , ILE D:57 , ASP D:76 , ILE D:77 , THR D:158 , ARG D:159 , VAL D:160 , GLY D:163 , MET D:164 , HIS D:167 , TRP D:168 , THR D:169 , CYS D:170 , ALA D:171 , VAL D:281 , CYS D:283 , THR D:319 , ALA D:320 , HIS D:324 , LEU D:547 , ASN D:593 , PRO D:594 , THR D:595 , SHG D:901 , HOH D:1017 , HOH D:1204 , HOH D:1214 , HOH D:1304 , HOH D:1524 , HOH D:1605 , HOH D:1752
BINDING SITE FOR RESIDUE FAD D 801
12
BC3
SOFTWARE
THR D:169 , GLN D:448 , HIS D:450 , ASP D:452 , ARG D:472 , VAL D:546 , HIS D:548 , ASN D:593 , FAD D:801 , HOH D:2163
BINDING SITE FOR RESIDUE SHG D 901
13
BC4
SOFTWARE
GLY E:53 , GLY E:55 , PRO E:56 , ILE E:57 , ASP E:76 , ILE E:77 , THR E:158 , ARG E:159 , VAL E:160 , GLY E:163 , MET E:164 , HIS E:167 , TRP E:168 , THR E:169 , CYS E:170 , ALA E:171 , VAL E:281 , CYS E:283 , THR E:319 , ALA E:320 , HIS E:324 , LEU E:547 , ASN E:593 , PRO E:594 , THR E:595 , SHG E:901 , HOH E:1148 , HOH E:1213 , HOH E:1231 , HOH E:1319 , HOH E:1565 , HOH E:1833 , HOH E:1840 , HOH E:2340
BINDING SITE FOR RESIDUE FAD E 801
14
BC5
SOFTWARE
THR E:169 , GLN E:448 , HIS E:450 , ASP E:452 , ARG E:472 , VAL E:546 , HIS E:548 , ASN E:593 , FAD E:801 , HOH E:2154 , HOH E:2850
BINDING SITE FOR RESIDUE SHG E 901
15
BC6
SOFTWARE
LEU E:121 , VAL E:123 , TRP E:131 , ALA E:133 , PHE E:137 , ARG E:139 , HOH E:1412 , SER F:462 , ILE F:463 , ASP F:464 , LEU F:467 , LEU H:149
BINDING SITE FOR RESIDUE MES E 902
16
BC7
SOFTWARE
VAL F:52 , GLY F:53 , GLY F:55 , PRO F:56 , ILE F:57 , ASP F:76 , ILE F:77 , THR F:158 , ARG F:159 , VAL F:160 , GLY F:163 , MET F:164 , HIS F:167 , TRP F:168 , THR F:169 , CYS F:170 , ALA F:171 , CYS F:283 , THR F:319 , ALA F:320 , HIS F:324 , LEU F:547 , ASN F:593 , THR F:595 , SHG F:901 , HOH F:1305 , HOH F:1325 , HOH F:1395 , HOH F:1398 , HOH F:1751 , HOH F:1952 , HOH F:1978 , HOH F:2073
BINDING SITE FOR RESIDUE FAD F 801
17
BC8
SOFTWARE
THR F:169 , GLN F:448 , HIS F:450 , ASP F:452 , ARG F:472 , LEU F:545 , VAL F:546 , HIS F:548 , ASN F:593 , FAD F:801
BINDING SITE FOR RESIDUE SHG F 901
18
BC9
SOFTWARE
SER E:462 , ILE E:463 , ASP E:464 , LEU F:121 , VAL F:122 , VAL F:123 , TRP F:131 , GLN F:132 , ALA F:133 , THR F:135 , PHE F:137 , ARG F:139 , HOH F:1221 , LEU G:149
BINDING SITE FOR RESIDUE MES F 902
19
CC1
SOFTWARE
VAL G:52 , GLY G:53 , GLY G:55 , PRO G:56 , ILE G:57 , ASP G:76 , ILE G:77 , LEU G:111 , THR G:158 , ARG G:159 , VAL G:160 , GLY G:163 , MET G:164 , HIS G:167 , TRP G:168 , THR G:169 , CYS G:170 , ALA G:171 , VAL G:281 , CYS G:283 , THR G:319 , ALA G:320 , HIS G:324 , LEU G:547 , ASN G:593 , THR G:595 , SHG G:901 , HOH G:1062 , HOH G:1088 , HOH G:1228 , HOH G:1279 , HOH G:1307 , HOH G:1381 , HOH G:1496 , HOH G:2110
BINDING SITE FOR RESIDUE FAD G 801
20
CC2
SOFTWARE
THR G:169 , GLN G:448 , HIS G:450 , ASP G:452 , ARG G:472 , LEU G:545 , VAL G:546 , HIS G:548 , ASN G:593 , FAD G:801
BINDING SITE FOR RESIDUE SHG G 901
21
CC3
SOFTWARE
VAL H:52 , GLY H:53 , GLY H:55 , PRO H:56 , ILE H:57 , ASP H:76 , ILE H:77 , ARG H:159 , VAL H:160 , GLY H:163 , MET H:164 , SER H:165 , HIS H:167 , TRP H:168 , THR H:169 , CYS H:170 , ALA H:171 , VAL H:281 , CYS H:283 , THR H:319 , ALA H:320 , HIS H:324 , LEU H:547 , ASN H:593 , THR H:595 , SHG H:901 , HOH H:1046 , HOH H:1130 , HOH H:1322 , HOH H:1337 , HOH H:1366 , HOH H:1704 , HOH H:1712 , HOH H:1886 , HOH H:1987 , HOH H:2467
BINDING SITE FOR RESIDUE FAD H 801
22
CC4
SOFTWARE
THR H:169 , GLN H:448 , HIS H:450 , ASP H:452 , ARG H:472 , VAL H:546 , HIS H:548 , ASN H:593 , FAD H:801 , HOH H:2553
BINDING SITE FOR RESIDUE SHG H 901
23
CC5
SOFTWARE
LEU F:149 , LEU G:121 , VAL G:123 , TRP G:131 , ALA G:133 , PHE G:137 , ARG G:139 , SER H:462 , ILE H:463 , ASP H:464
BINDING SITE FOR RESIDUE MES H 902
24
CC6
SOFTWARE
LEU E:149 , SER G:462 , ILE G:463 , ASP G:464 , LEU H:121 , VAL H:123 , GLN H:132 , ALA H:133 , PHE H:137 , ARG H:139
BINDING SITE FOR RESIDUE MES H 624
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_GMC_oxred_C_3k4mH01 (H:540-605)
1b: PFAM_GMC_oxred_C_3k4mH02 (H:540-605)
1c: PFAM_GMC_oxred_C_3k4mH03 (H:540-605)
1d: PFAM_GMC_oxred_C_3k4mH04 (H:540-605)
1e: PFAM_GMC_oxred_C_3k4mH05 (H:540-605)
1f: PFAM_GMC_oxred_C_3k4mH06 (H:540-605)
1g: PFAM_GMC_oxred_C_3k4mH07 (H:540-605)
1h: PFAM_GMC_oxred_C_3k4mH08 (H:540-605)
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Clan
:
no clan defined [family: GMC_oxred_C]
(22)
Family
:
GMC_oxred_C
(22)
Trametes ochracea (White-rot fungus) (Trametes multicolor)
(13)
1a
GMC_oxred_C-3k4mH01
H:540-605
1b
GMC_oxred_C-3k4mH02
H:540-605
1c
GMC_oxred_C-3k4mH03
H:540-605
1d
GMC_oxred_C-3k4mH04
H:540-605
1e
GMC_oxred_C-3k4mH05
H:540-605
1f
GMC_oxred_C-3k4mH06
H:540-605
1g
GMC_oxred_C-3k4mH07
H:540-605
1h
GMC_oxred_C-3k4mH08
H:540-605
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