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3K35
Biol. Unit 7
Info
Asym.Unit (290 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (52 KB)
Biol.Unit 4 (51 KB)
Biol.Unit 5 (52 KB)
Biol.Unit 6 (52 KB)
Biol.Unit 7 (283 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SIRT6
Authors
:
P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, A. Bochk C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)
Date
:
01 Oct 09 (Deposition) - 08 Dec 09 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Keywords
:
Rossmann Fold, Zn-Binding Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, Metal-Binding, Nad, Nadp, Nucleus, Phosphoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
[
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ADENOSINE-5-DIPHOSPHORIBOSE (APRa)
1b: ADENOSINE-5-DIPHOSPHORIBOSE (APRb)
1c: ADENOSINE-5-DIPHOSPHORIBOSE (APRc)
1d: ADENOSINE-5-DIPHOSPHORIBOSE (APRd)
1e: ADENOSINE-5-DIPHOSPHORIBOSE (APRe)
1f: ADENOSINE-5-DIPHOSPHORIBOSE (APRf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
Sorry, no Info available
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:139 , CYS A:142 , CYS A:164 , CYS A:175
BINDING SITE FOR RESIDUE ZN A 317
02
AC2
SOFTWARE
GLY A:50 , ALA A:51 , GLY A:52 , THR A:55 , ASP A:61 , PHE A:62 , ARG A:63 , TRP A:69 , GLN A:111 , HIS A:131 , GLY A:212 , THR A:213 , SER A:214 , ILE A:217 , ASN A:238 , LEU A:239 , GLN A:240 , GLY A:254 , TYR A:255 , VAL A:256 , HOH A:326 , HOH A:356 , HOH A:374 , HOH A:487 , HOH A:500
BINDING SITE FOR RESIDUE APR A 1001
03
AC3
SOFTWARE
LYS A:31 , ARG A:251 , HIS A:253 , HOH A:534
BINDING SITE FOR RESIDUE SO4 A 318
04
AC4
SOFTWARE
HIS A:66 , ARG A:74 , HOH A:740
BINDING SITE FOR RESIDUE SO4 A 319
05
AC5
SOFTWARE
HIS A:66 , LYS A:79 , HOH A:626
BINDING SITE FOR RESIDUE SO4 A 320
06
AC6
SOFTWARE
ARG A:203 , ARG A:229 , ARG A:230 , HOH A:526 , ARG B:106
BINDING SITE FOR RESIDUE SO4 A 321
07
AC7
SOFTWARE
CYS B:139 , CYS B:142 , CYS B:164 , CYS B:175
BINDING SITE FOR RESIDUE ZN B 317
08
AC8
SOFTWARE
GLY B:50 , ALA B:51 , GLY B:52 , THR B:55 , ASP B:61 , PHE B:62 , ARG B:63 , TRP B:69 , GLN B:111 , HIS B:131 , GLY B:212 , THR B:213 , SER B:214 , ILE B:217 , ASN B:238 , LEU B:239 , GLN B:240 , GLY B:254 , TYR B:255 , VAL B:256 , HOH B:326 , HOH B:327 , HOH B:371 , HOH B:388 , HOH B:902
BINDING SITE FOR RESIDUE APR B 2001
09
AC9
SOFTWARE
LYS B:31 , ARG B:251 , HIS B:253
BINDING SITE FOR RESIDUE SO4 B 318
10
BC1
SOFTWARE
VAL B:152 , GLY B:153 , THR B:160 , ARG B:162 , LYS D:294
BINDING SITE FOR RESIDUE SO4 B 319
11
BC2
SOFTWARE
CYS C:139 , CYS C:142 , CYS C:164 , CYS C:175
BINDING SITE FOR RESIDUE ZN C 317
12
BC3
SOFTWARE
GLY C:50 , ALA C:51 , GLY C:52 , THR C:55 , ASP C:61 , PHE C:62 , ARG C:63 , TRP C:69 , GLN C:111 , HIS C:131 , GLY C:212 , THR C:213 , SER C:214 , ILE C:217 , ASN C:238 , LEU C:239 , GLN C:240 , GLY C:254 , TYR C:255 , VAL C:256 , HOH C:326 , HOH C:354 , HOH C:372 , HOH C:472 , HOH C:612 , HOH C:618
BINDING SITE FOR RESIDUE APR C 3001
13
BC4
SOFTWARE
ARG C:218 , PRO C:219 , ASN C:222 , HOH C:366
BINDING SITE FOR RESIDUE SO4 C 318
14
BC5
SOFTWARE
CYS D:139 , CYS D:142 , CYS D:164 , CYS D:175
BINDING SITE FOR RESIDUE ZN D 317
15
BC6
SOFTWARE
GLY D:50 , ALA D:51 , GLY D:52 , THR D:55 , ASP D:61 , PHE D:62 , ARG D:63 , TRP D:69 , GLN D:111 , HIS D:131 , GLY D:212 , THR D:213 , SER D:214 , ILE D:217 , ASN D:238 , LEU D:239 , GLN D:240 , GLY D:254 , TYR D:255 , VAL D:256 , HOH D:323 , HOH D:333 , HOH D:374 , HOH D:1005
BINDING SITE FOR RESIDUE APR D 4001
16
BC7
SOFTWARE
LYS D:31 , ARG D:251 , HIS D:253 , HOH D:376 , HOH D:778
BINDING SITE FOR RESIDUE SO4 D 318
17
BC8
SOFTWARE
HIS D:66 , LYS D:79 , HOH D:335 , HOH D:499 , HOH D:682 , HOH D:734
BINDING SITE FOR RESIDUE SO4 D 319
18
BC9
SOFTWARE
CYS E:139 , CYS E:142 , CYS E:164 , CYS E:175
BINDING SITE FOR RESIDUE ZN E 317
19
CC1
SOFTWARE
GLY E:50 , ALA E:51 , GLY E:52 , THR E:55 , ASP E:61 , PHE E:62 , ARG E:63 , TRP E:69 , GLN E:111 , HIS E:131 , GLY E:212 , THR E:213 , SER E:214 , ILE E:217 , ASN E:238 , LEU E:239 , GLN E:240 , GLY E:254 , TYR E:255 , VAL E:256 , HOH E:326 , HOH E:343 , HOH E:345 , HOH E:468
BINDING SITE FOR RESIDUE APR E 5001
20
CC2
SOFTWARE
HIS E:66 , LYS E:79 , HOH E:337 , HOH E:341 , HOH E:419
BINDING SITE FOR RESIDUE SO4 E 318
21
CC3
SOFTWARE
HIS E:66
BINDING SITE FOR RESIDUE SO4 E 319
22
CC4
SOFTWARE
CYS F:139 , CYS F:142 , CYS F:164 , CYS F:175
BINDING SITE FOR RESIDUE ZN F 317
23
CC5
SOFTWARE
GLY F:50 , ALA F:51 , GLY F:52 , THR F:55 , ASP F:61 , PHE F:62 , ARG F:63 , TRP F:69 , GLN F:111 , HIS F:131 , GLY F:212 , THR F:213 , SER F:214 , ILE F:217 , ASN F:238 , LEU F:239 , GLN F:240 , GLY F:254 , TYR F:255 , VAL F:256 , HOH F:333 , HOH F:381
BINDING SITE FOR RESIDUE APR F 6001
24
CC6
SOFTWARE
LYS F:31 , ARG F:251 , HIS F:253
BINDING SITE FOR RESIDUE SO4 F 318
25
CC7
SOFTWARE
LYS B:294 , ARG D:74 , VAL F:152 , GLY F:153 , ARG F:162
BINDING SITE FOR RESIDUE SO4 F 319
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017154 (S44N, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017154
S
46
N
SIR6_HUMAN
Polymorphism
352493
A/B/C/D/E/F
S
44
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:33-272,B:33-272,C:33-272,D:33-27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR6_HUMAN
35-274
6
A:33-272
B:33-272
C:33-272
D:33-272
E:33-272
F:33-272
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
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Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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