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3K35
Biol. Unit 5
Info
Asym.Unit (290 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (52 KB)
Biol.Unit 4 (51 KB)
Biol.Unit 5 (52 KB)
Biol.Unit 6 (52 KB)
Biol.Unit 7 (283 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SIRT6
Authors
:
P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, A. Bochk C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)
Date
:
01 Oct 09 (Deposition) - 08 Dec 09 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Keywords
:
Rossmann Fold, Zn-Binding Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, Metal-Binding, Nad, Nadp, Nucleus, Phosphoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ADENOSINE-5-DIPHOSPHORIBOSE (APRa)
1b: ADENOSINE-5-DIPHOSPHORIBOSE (APRb)
1c: ADENOSINE-5-DIPHOSPHORIBOSE (APRc)
1d: ADENOSINE-5-DIPHOSPHORIBOSE (APRd)
1e: ADENOSINE-5-DIPHOSPHORIBOSE (APRe)
1f: ADENOSINE-5-DIPHOSPHORIBOSE (APRf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APR
1
Ligand/Ion
ADENOSINE-5-DIPHOSPHORIBOSE
2
SO4
2
Ligand/Ion
SULFATE ION
3
UNX
3
Ligand/Ion
UNKNOWN ATOM OR ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: BC9 (SOFTWARE)
2: CC1 (SOFTWARE)
3: CC2 (SOFTWARE)
4: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC9
SOFTWARE
CYS E:139 , CYS E:142 , CYS E:164 , CYS E:175
BINDING SITE FOR RESIDUE ZN E 317
2
CC1
SOFTWARE
GLY E:50 , ALA E:51 , GLY E:52 , THR E:55 , ASP E:61 , PHE E:62 , ARG E:63 , TRP E:69 , GLN E:111 , HIS E:131 , GLY E:212 , THR E:213 , SER E:214 , ILE E:217 , ASN E:238 , LEU E:239 , GLN E:240 , GLY E:254 , TYR E:255 , VAL E:256 , HOH E:326 , HOH E:343 , HOH E:345 , HOH E:468
BINDING SITE FOR RESIDUE APR E 5001
3
CC2
SOFTWARE
HIS E:66 , LYS E:79 , HOH E:337 , HOH E:341 , HOH E:419
BINDING SITE FOR RESIDUE SO4 E 318
4
CC3
SOFTWARE
HIS E:66
BINDING SITE FOR RESIDUE SO4 E 319
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017154 (S44N, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017154
S
46
N
SIR6_HUMAN
Polymorphism
352493
E
S
44
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (E:33-272)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR6_HUMAN
35-274
1
-
-
-
-
E:33-272
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain E
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
Biol.Unit 3 (52 KB)
Header - Biol.Unit 3
Biol.Unit 4 (51 KB)
Header - Biol.Unit 4
Biol.Unit 5 (52 KB)
Header - Biol.Unit 5
Biol.Unit 6 (52 KB)
Header - Biol.Unit 6
Biol.Unit 7 (283 KB)
Header - Biol.Unit 7
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