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3K2W
Biol. Unit 1
Info
Asym.Unit (643 KB)
Biol.Unit 1 (321 KB)
Biol.Unit 2 (324 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETAINE-ALDEHYDE DEHYDROGENASE FROM PSEUDOALTEROMONAS ATLANTICA T6C
Authors
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo, Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
30 Sep 09 (Deposition) - 20 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Psi-2, Aldehyde Dehydrogenase, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Betaine-Aldehyde Dehydrogenase From Pseudoalteromonas Atlantica
To Be Published
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
8
Ligand/Ion
GLYCEROL
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:69 , ARG A:72 , ALA A:123 , LYS A:144 , ILE A:172 , HOH A:698 , GOL B:497
BINDING SITE FOR RESIDUE GOL A 496
02
AC2
SOFTWARE
LYS A:259 , ALA A:260 , LEU A:418 , SER A:419
BINDING SITE FOR RESIDUE CL A 497
03
AC3
SOFTWARE
ILE A:130 , PRO A:132 , ILE B:126 , GLY B:128 , HIS B:143 , LYS B:144 , HOH B:508 , HOH B:524 , HOH B:1231
BINDING SITE FOR RESIDUE GOL B 496
04
AC4
SOFTWARE
GLY A:128 , HIS A:143 , LYS A:144 , GOL A:496 , HOH A:509 , ILE B:130 , LEU B:131 , PRO B:132 , HOH B:517 , HOH B:1035
BINDING SITE FOR RESIDUE GOL B 497
05
AC5
SOFTWARE
ALA B:268 , ASP B:269 , HIS B:423 , GLN B:425 , ASN B:445
BINDING SITE FOR RESIDUE ACT B 498
06
AC6
SOFTWARE
TYR B:141 , ILE B:484 , GLU B:486 , PHE C:427 , ASN C:431 , HOH D:710
BINDING SITE FOR RESIDUE GOL B 499
07
AC7
SOFTWARE
LYS B:259 , ALA B:260 , LEU B:418 , SER B:419 , HOH B:1308
BINDING SITE FOR RESIDUE CL B 500
08
AC8
SOFTWARE
LYS C:259 , ALA C:260 , LEU C:418 , SER C:419
BINDING SITE FOR RESIDUE CL C 496
09
AC9
SOFTWARE
TYR C:302 , ASP C:379 , VAL C:380 , ILE C:398 , VAL C:399 , LYS C:400 , HOH C:1371
BINDING SITE FOR RESIDUE GOL C 497
10
BC1
SOFTWARE
ALA C:268 , ASP C:269 , HIS C:423 , GLN C:425 , ASN C:445
BINDING SITE FOR RESIDUE ACT C 498
11
BC2
SOFTWARE
ARG C:72 , ALA C:123 , ILE C:172 , THR C:173 , GOL D:497 , HOH D:1808
BINDING SITE FOR RESIDUE ACT C 499
12
BC3
SOFTWARE
ILE C:130 , PRO C:132 , ILE D:126 , GLY D:128 , HIS D:143 , LYS D:144 , GOL D:498 , HOH D:627 , HOH D:699 , HOH D:812
BINDING SITE FOR RESIDUE GOL D 496
13
BC4
SOFTWARE
GLY C:128 , LYS C:144 , ACT C:499 , HOH C:527 , ILE D:130 , PRO D:132 , HOH D:1185 , HOH D:1772 , HOH D:1808
BINDING SITE FOR RESIDUE GOL D 497
14
BC5
SOFTWARE
ALA D:69 , ARG D:72 , ALA D:123 , ILE D:172 , LEU D:477 , GOL D:496 , HOH D:549
BINDING SITE FOR RESIDUE GOL D 498
15
BC6
SOFTWARE
GLY D:258 , LYS D:259 , ALA D:260 , LEU D:418 , SER D:419
BINDING SITE FOR RESIDUE CL D 499
16
BC7
SOFTWARE
ALA D:268 , ASP D:269 , LYS D:272 , HIS D:423 , THR D:424 , ASN D:445
BINDING SITE FOR RESIDUE ACT D 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3k2wa_ (A:)
1b: SCOP_d3k2wb_ (B:)
1c: SCOP_d3k2wc_ (C:)
1d: SCOP_d3k2wd_ (D:)
1e: SCOP_d3k2we_ (E:)
1f: SCOP_d3k2wf_ (F:)
1g: SCOP_d3k2wg_ (G:)
1h: SCOP_d3k2wh_ (H:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Pseudoalteromonas atlantica [TaxId: 342610]
(1)
1a
d3k2wa_
A:
1b
d3k2wb_
B:
1c
d3k2wc_
C:
1d
d3k2wd_
D:
1e
d3k2we_
E:
1f
d3k2wf_
F:
1g
d3k2wg_
G:
1h
d3k2wh_
H:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3k2wB01 (B:1-257,B:452-488)
1b: CATH_3k2wE01 (E:3-257,E:452-488)
1c: CATH_3k2wH01 (H:5-257,H:452-490)
1d: CATH_3k2wA01 (A:5-257,A:452-488)
1e: CATH_3k2wC01 (C:5-257,C:452-488)
1f: CATH_3k2wG01 (G:5-257,G:452-488)
1g: CATH_3k2wD01 (D:5-257,D:452-487)
1h: CATH_3k2wF01 (F:5-257,F:452-487)
2a: CATH_3k2wB02 (B:258-451)
2b: CATH_3k2wC02 (C:258-451)
2c: CATH_3k2wD02 (D:258-451)
2d: CATH_3k2wE02 (E:258-451)
2e: CATH_3k2wF02 (F:258-451)
2f: CATH_3k2wG02 (G:258-451)
2g: CATH_3k2wH02 (H:258-451)
2h: CATH_3k2wA02 (A:258-451)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Pseudoalteromonas atlantica t6c. Organism_taxid: 342610. Strain: t6c /baa-1087.
(1)
1a
3k2wB01
B:1-257,B:452-488
1b
3k2wE01
E:3-257,E:452-488
1c
3k2wH01
H:5-257,H:452-490
1d
3k2wA01
A:5-257,A:452-488
1e
3k2wC01
C:5-257,C:452-488
1f
3k2wG01
G:5-257,G:452-488
1g
3k2wD01
D:5-257,D:452-487
1h
3k2wF01
F:5-257,F:452-487
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Pseudoalteromonas atlantica t6c. Organism_taxid: 342610. Strain: t6c /baa-1087.
(1)
2a
3k2wB02
B:258-451
2b
3k2wC02
C:258-451
2c
3k2wD02
D:258-451
2d
3k2wE02
E:258-451
2e
3k2wF02
F:258-451
2f
3k2wG02
G:258-451
2g
3k2wH02
H:258-451
2h
3k2wA02
A:258-451
[
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]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3k2wH01 (H:19-482)
1b: PFAM_Aldedh_3k2wH02 (H:19-482)
1c: PFAM_Aldedh_3k2wH03 (H:19-482)
1d: PFAM_Aldedh_3k2wH04 (H:19-482)
1e: PFAM_Aldedh_3k2wH05 (H:19-482)
1f: PFAM_Aldedh_3k2wH06 (H:19-482)
1g: PFAM_Aldedh_3k2wH07 (H:19-482)
1h: PFAM_Aldedh_3k2wH08 (H:19-482)
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(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
(1)
1a
Aldedh-3k2wH01
H:19-482
1b
Aldedh-3k2wH02
H:19-482
1c
Aldedh-3k2wH03
H:19-482
1d
Aldedh-3k2wH04
H:19-482
1e
Aldedh-3k2wH05
H:19-482
1f
Aldedh-3k2wH06
H:19-482
1g
Aldedh-3k2wH07
H:19-482
1h
Aldedh-3k2wH08
H:19-482
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Asym.Unit (643 KB)
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