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3K1X
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (24 KB)
Biol.Unit 5 (24 KB)
Biol.Unit 6 (24 KB)
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(1)
Title
:
ACIDIC FIBROBLAST GROWTH FACTOR (FGF-1) COMPLEXED WITH DOBESILATE
Authors
:
A. Romero, I. S. Fernandez, G. Gimenez-Gallego
Date
:
29 Sep 09 (Deposition) - 02 Feb 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Acidic Fibroblast Growth Factor, Inhibitors, Acetylation, Hormone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. S. Fernandez, P. Cuevas, J. Angulo, P. Lopez-Navajas, A. Canales-Mayordomo, R. Gonzalez-Corrochano, R. M. Lozano, S. Valverde, J. Jimenez-Barbero, A. Romero, G. Gimenez-Gallego
Gentisic Acid, A Compound Associated With Plant Defense And A Metabolite Of Aspirin, Heads A New Class Of In Vivo Fibroblast Growth Factor Inhibitors.
J. Biol. Chem. V. 285 11714 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2,5-DIHYDROXYBENZENESULFONIC ACID (DBXa)
1b: 2,5-DIHYDROXYBENZENESULFONIC ACID (DBXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DBX
2
Ligand/Ion
2,5-DIHYDROXYBENZENESULFONIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:10 , LYS A:110 , GLN A:119 , LYS A:120 , ALA A:121 , HOH A:145 , HOH A:149 , THR C:61
BINDING SITE FOR RESIDUE DBX A 131
2
AC2
SOFTWARE
ASN B:10 , LYS B:105 , LYS B:110 , GLN B:119 , LYS B:120 , ALA B:121
BINDING SITE FOR RESIDUE DBX B 131
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:63-86,B:63-86,C:63-86,D:63-86,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
6
A:63-86
B:63-86
C:63-86
D:63-86
E:63-86
F:63-86
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Exons
(3, 18)
Info
All Exons
Exon 1.8b (A:1-34 | B:1-34 | C:1-34 | D:1-34 ...)
Exon 1.9b (A:34-68 | B:34-68 | C:34-68 | D:34...)
Exon 1.10f (A:69-130 | B:69-130 | C:69-130 | D...)
View:
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All Exon Boundaries
1: Boundary 1.3/1.8b
2: Boundary 1.8b/1.9b
3: Boundary 1.9b/1.10f
4: Boundary 1.10f/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
1.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
6
A:1-34
B:1-34
C:1-34
D:1-34
E:1-34
F:1-34
34
34
34
34
34
34
1.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
6
A:34-68
B:34-68
C:34-68
D:34-68
E:34-68
F:34-68
35
35
35
35
35
35
1.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
6
A:69-130
B:69-130
C:69-130
D:69-130
E:69-130
F:69-130
62
62
62
62
62
62
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3k1xa_ (A:)
1b: SCOP_d3k1xb_ (B:)
1c: SCOP_d3k1xc_ (C:)
1d: SCOP_d3k1xd_ (D:)
1e: SCOP_d3k1xe_ (E:)
1f: SCOP_d3k1xf_ (F:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d3k1xa_
A:
1b
d3k1xb_
B:
1c
d3k1xc_
C:
1d
d3k1xd_
D:
1e
d3k1xe_
E:
1f
d3k1xf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3k1xA00 (A:1-130)
1b: CATH_3k1xB00 (B:1-130)
1c: CATH_3k1xC00 (C:1-130)
1d: CATH_3k1xD00 (D:1-130)
1e: CATH_3k1xE00 (E:1-130)
1f: CATH_3k1xF00 (F:1-130)
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)
Organisms
(
)
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Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
1a
3k1xA00
A:1-130
1b
3k1xB00
B:1-130
1c
3k1xC00
C:1-130
1d
3k1xD00
D:1-130
1e
3k1xE00
E:1-130
1f
3k1xF00
F:1-130
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_FGF_3k1xF01 (F:2-125)
1b: PFAM_FGF_3k1xF02 (F:2-125)
1c: PFAM_FGF_3k1xF03 (F:2-125)
1d: PFAM_FGF_3k1xF04 (F:2-125)
1e: PFAM_FGF_3k1xF05 (F:2-125)
1f: PFAM_FGF_3k1xF06 (F:2-125)
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Clan
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Trefoil
(131)
Family
:
FGF
(36)
Homo sapiens (Human)
(34)
1a
FGF-3k1xF01
F:2-125
1b
FGF-3k1xF02
F:2-125
1c
FGF-3k1xF03
F:2-125
1d
FGF-3k1xF04
F:2-125
1e
FGF-3k1xF05
F:2-125
1f
FGF-3k1xF06
F:2-125
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (136 KB)
Header - Asym.Unit
Biol.Unit 1 (25 KB)
Header - Biol.Unit 1
Biol.Unit 2 (25 KB)
Header - Biol.Unit 2
Biol.Unit 3 (24 KB)
Header - Biol.Unit 3
Biol.Unit 4 (24 KB)
Header - Biol.Unit 4
Biol.Unit 5 (24 KB)
Header - Biol.Unit 5
Biol.Unit 6 (24 KB)
Header - Biol.Unit 6
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