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3K1U
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
BETA-XYLOSIDASE, FAMILY 43 GLYCOSYL HYDROLASE FROM CLOSTRIDIUM ACETOBUTYLICUM
Authors
:
J. Osipiuk, R. Wu, R. Jedrzejczak, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date
:
28 Sep 09 (Deposition) - 06 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Apc20493, Beta-Xylosidase, Family 43 Glycosyl Hydrolase, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Osipiuk, R. Wu, R. Jedrzejczak, A. Joachimiak
X-Ray Crystal Structure Of Beta-Xylosidase, Family 43 Glycosyl Hydrolase From Clostridium Acetobutylicum At 1. 55 Resolution
To Be Published
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
4a: SODIUM ION (NAa)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
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No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
4
NA
1
Ligand/Ion
SODIUM ION
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:94 , ILE A:95 , GLU A:96 , ASN A:232 , LEU A:233 , LEU A:234 , HOH A:520
BINDING SITE FOR RESIDUE EDO A 401
02
AC2
SOFTWARE
LYS A:126 , THR A:127 , ALA A:128 , LEU A:173 , GLY A:191 , PHE A:192 , HOH A:357 , HOH A:375 , HOH A:514
BINDING SITE FOR RESIDUE EDO A 402
03
AC3
SOFTWARE
LYS A:157 , GLY A:158 , GLU A:168 , HOH A:353 , HOH A:476
BINDING SITE FOR RESIDUE EDO A 403
04
AC4
SOFTWARE
ASN A:111 , ASN A:118 , THR A:181 , LYS A:182 , GLU A:184 , LYS A:236 , LYS A:241 , HOH A:559 , HOH A:678
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
GLU A:54 , GLU A:186 , TRP A:187 , LYS A:190 , HOH A:683
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
TRP A:59 , ARG A:60 , HIS A:62 , GLU A:121 , HOH A:577
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
GLU A:75 , HIS A:260 , HOH A:369 , HOH A:424 , HOH A:512 , HOH A:560
BINDING SITE FOR RESIDUE MG A 409
08
AC8
SOFTWARE
HOH A:441 , HOH A:450 , HOH A:470 , HOH A:504 , HOH A:576 , HOH A:665
BINDING SITE FOR RESIDUE MG A 410
09
AC9
SOFTWARE
HOH A:561 , HOH A:604 , HOH A:646 , HOH A:648 , HOH A:649 , HOH A:650
BINDING SITE FOR RESIDUE MG A 411
10
BC1
SOFTWARE
GLU A:96 , THR A:99 , PHE A:100 , ASN A:101 , HOH A:361
BINDING SITE FOR RESIDUE NA A 412
11
BC2
SOFTWARE
ASP A:16 , ALA A:73 , LEU A:134 , ASP A:135 , GLU A:196 , TYR A:220 , HIS A:260 , HIS A:277 , ARG A:294 , HOH A:802 , HOH A:803 , HOH A:808 , HOH A:810
BINDING SITE FOR RESIDUE TRS A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3k1uA00 (A:6-319)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
5 Propellor
(21)
Topology
:
Tachylectin-2; Chain A
(21)
Homologous Superfamily
:
Glycosyl hydrolase domain; family 43
(20)
Clostridium acetobutylicum. Organism_taxid: 1488. Strain: atcc 824.
(1)
1a
3k1uA00
A:6-319
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Pfam Domains
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Chain A
Asymmetric Unit 1
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