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3K1G
Biol. Unit 3
Info
Asym.Unit (446 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 10 (115 KB)
Biol.Unit 11 (115 KB)
Biol.Unit 12 (117 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (62 KB)
Biol.Unit 5 (62 KB)
Biol.Unit 6 (61 KB)
Biol.Unit 7 (62 KB)
Biol.Unit 8 (63 KB)
Biol.Unit 9 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIPEPTIDE EPIMERASE FROM ENTEROCOCCUS FAECALIS V583 COMPLEXED WITH MG AND DIPEPTIDE L-SER-L-TYR
Authors
:
A. A. Fedorov, E. V. Fedorov, H. J. Imker, A. Sakai, J. A. Gerlt, S. C. Almo
Date
:
27 Sep 09 (Deposition) - 18 Aug 10 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: A,B (1x)
Biol. Unit 10: C,D (1x)
Biol. Unit 11: E,F (1x)
Biol. Unit 12: G,H (1x)
Keywords
:
Dipeptide Epimerase, Enolase Superfamily, L-Ser-L-Tyr, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Lukk, A. Sakai, C. Kalyanaraman, S. D. Brown, H. J. Imker, L. Song, A. A. Fedorov, E. V. Fedorov, R. Toro, B. Hillerich, R. Seidel, Y. Patskovsky, M. W. Vetting, S. K. Nair, P. C. Babbitt, S. C. Almo, J. A. Gerlt, M. P. Jacobson
Homology Models Guide Discovery Of Diverse Enzyme Specificities Among Dipeptide Epimerases In The Enolase Superfamily.
Proc. Natl. Acad. Sci. Usa V. 109 4122 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: SERINE (SERa)
3b: SERINE (SERb)
3c: SERINE (SERc)
3d: SERINE (SERd)
3e: SERINE (SERe)
3f: SERINE (SERf)
3g: SERINE (SERg)
3h: SERINE (SERh)
4a: TYROSINE (TYRa)
4b: TYROSINE (TYRb)
4c: TYROSINE (TYRc)
4d: TYROSINE (TYRd)
4e: TYROSINE (TYRe)
4f: TYROSINE (TYRf)
4g: TYROSINE (TYRg)
4h: TYROSINE (TYRh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SER
1
Mod. Amino Acid
SERINE
4
TYR
1
Mod. Amino Acid
TYROSINE
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Sites
(4, 4)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
PHE C:19 , THR C:134 , LYS C:159 , LYS C:161 , CYS C:292 , ALA C:294 , ASP C:318 , ASP C:320 , TYR C:356 , GOL C:357
BINDING SITE FOR RESIDUE SER C 355
2
BC1
SOFTWARE
ILE C:21 , PHE C:53 , LYS C:159 , LYS C:161 , ASP C:189 , ASN C:191 , GLU C:215 , ASP C:240 , LYS C:264 , CYS C:292 , GLU C:295 , SER C:355 , MG C:358 , HOH C:377
BINDING SITE FOR RESIDUE TYR C 356
3
BC2
SOFTWARE
LEU C:15 , THR C:134 , ASP C:320 , GLY C:324 , SER C:355 , HOH C:382
BINDING SITE FOR RESIDUE GOL C 357
4
BC3
SOFTWARE
LYS C:159 , ASP C:189 , GLU C:215 , ASP C:240 , TYR C:356 , HOH C:359
BINDING SITE FOR RESIDUE MG C 358
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: MR_MLE_2 (C:186-217)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MR_MLE_2
PS00909
Mandelate racemase / muconate lactonizing enzyme family signature 2.
HYEP_ENTFA
186-217
1
-
-
C:186-217
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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Chain C
Asymmetric Unit 1
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Asym.Unit (446 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 10 (115 KB)
Header - Biol.Unit 10
Biol.Unit 11 (115 KB)
Header - Biol.Unit 11
Biol.Unit 12 (117 KB)
Header - Biol.Unit 12
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
Biol.Unit 4 (62 KB)
Header - Biol.Unit 4
Biol.Unit 5 (62 KB)
Header - Biol.Unit 5
Biol.Unit 6 (61 KB)
Header - Biol.Unit 6
Biol.Unit 7 (62 KB)
Header - Biol.Unit 7
Biol.Unit 8 (63 KB)
Header - Biol.Unit 8
Biol.Unit 9 (116 KB)
Header - Biol.Unit 9
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