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3JZP
Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (20 KB)
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(1)
Title
:
HUMAN MDMX LIGANDED WITH A 12MER PEPTIDE INHIBITOR (PDI6W)
Authors
:
E. Schonbrunn, J. Phan
Date
:
24 Sep 09 (Deposition) - 10 Nov 09 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (1x)
Keywords
:
Cell Cycle, P53-Binding Protein Mdm4, Double Minute 4 Protein, Alternative Splicing, Metal-Binding, Nucleus, Polymorphism, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Phan, Z. Li, A. Kasprzak, B. Li, S. Sebti, W. Guida, E. Schonbrunn, J. Chen
Structure-Based Design Of High Affinity Peptides Inhibiting The Interaction Of P53 With Mdm2 And Mdmx.
J. Biol. Chem. V. 285 2174 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
1
Ligand/Ion
POTASSIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:12 , LYS A:63 , GLN A:64 , TYR A:66 , HOH A:123
BINDING SITE FOR RESIDUE K A 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:23-26)
Exon 1.3 (A:27-51)
Exon 1.4 (A:52-96)
Exon 1.5a (A:96-109)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.8a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367182
1a
ENSE00001443738
chr1:
204485511-204485637
127
MDM4_HUMAN
-
0
0
-
-
1.2a
ENST00000367182
2a
ENSE00002156140
chr1:
204494612-204494724
113
MDM4_HUMAN
1-26
26
1
A:23-26
4
1.3
ENST00000367182
3
ENSE00001039934
chr1:
204495488-204495562
75
MDM4_HUMAN
27-51
25
1
A:27-51
25
1.4
ENST00000367182
4
ENSE00001039926
chr1:
204499812-204499945
134
MDM4_HUMAN
52-96
45
1
A:52-96
45
1.5a
ENST00000367182
5a
ENSE00001039924
chr1:
204501319-204501374
56
MDM4_HUMAN
96-115
20
1
A:96-109
14
1.8a
ENST00000367182
8a
ENSE00001039927
chr1:
204506558-204506625
68
MDM4_HUMAN
115-137
23
0
-
-
1.9d
ENST00000367182
9d
ENSE00001039922
chr1:
204507337-204507436
100
MDM4_HUMAN
138-171
34
0
-
-
1.10b
ENST00000367182
10b
ENSE00001075004
chr1:
204511912-204512072
161
MDM4_HUMAN
171-224
54
0
-
-
1.11b
ENST00000367182
11b
ENSE00001074998
chr1:
204513663-204513812
150
MDM4_HUMAN
225-274
50
0
-
-
1.12b
ENST00000367182
12b
ENSE00001075005
chr1:
204515925-204516005
81
MDM4_HUMAN
275-301
27
0
-
-
1.13e
ENST00000367182
13e
ENSE00001123001
chr1:
204518241-204527248
9008
MDM4_HUMAN
302-490
189
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3jzpa_ (A:)
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Protein Domains
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(
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SWIB/MDM2 domain
(62)
Superfamily
:
SWIB/MDM2 domain
(62)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3jzpa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3jzpA00 (A:23-109)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MDM2
(34)
Homologous Superfamily
:
MDM2
(34)
Human (Homo sapiens)
(22)
1a
3jzpA00
A:23-109
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SWIB_3jzpA01 (A:26-101)
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Clan
:
no clan defined [family: SWIB]
(22)
Family
:
SWIB
(22)
Homo sapiens (Human)
(15)
1a
SWIB-3jzpA01
A:26-101
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Asymmetric Unit 1
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