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3JZI
Asym. Unit
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Asym.Unit (153 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX WITH BENZIMIDAZOLE SERIES
Authors
:
C. Cheng, G. W. Shipps, Z. Yang, B. Sun, N. Kawahata, K. Soucy, A. Soriano, P. Orth, L. Xiao, P. Mann, T. Black
Date
:
23 Sep 09 (Deposition) - 03 Nov 09 (Release) - 24 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Biotin Carboxylase; Accc; Acetyl Coenzyme-A Carboxylase; Accase; , Atp-Binding, Biotin, Fatty Acid Biosynthesis, Ligase, Lipid Synthesis, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Cheng, G. W. Shipps, Z. Yang, B. Sun, N. Kawahata, K. A. Soucy, A. Soriano, P. Orth, L. Xiao, P. Mann, T. Black
Discovery And Optimization Of Antibacterial Accc Inhibitors.
Bioorg. Med. Chem. Lett. V. 19 6507 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 7-AMINO-2-[(2-CHLOROBENZYL)AMINO]-... (JZLa)
1b: 7-AMINO-2-[(2-CHLOROBENZYL)AMINO]-... (JZLb)
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No.
Name
Count
Type
Full Name
1
JZL
2
Ligand/Ion
7-AMINO-2-[(2-CHLOROBENZYL)AMINO]-1-{[(1S,2S)-2-HYDROXYCYCLOHEPTYL]METHYL}-1H-BENZIMIDAZOLE-5-CARBOXAMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:116 , LYS A:159 , ALA A:160 , GLY A:164 , GLY A:165 , ARG A:167 , MET A:169 , TYR A:199 , GLU A:201 , LYS A:202 , TYR A:203 , LEU A:204 , HIS A:209 , GLN A:233 , HIS A:236 , LEU A:278 , ILE A:287 , GLU A:288 , HOH A:640
BINDING SITE FOR RESIDUE JZL A 466
2
AC2
SOFTWARE
LYS B:116 , ILE B:157 , LYS B:159 , ALA B:160 , GLY B:164 , GLY B:165 , ARG B:167 , GLY B:168 , MET B:169 , TYR B:199 , GLU B:201 , LYS B:202 , TYR B:203 , LEU B:204 , HIS B:209 , GLN B:233 , HIS B:236 , LEU B:278 , ILE B:287 , GLU B:288 , HOH B:674 , HOH B:689
BINDING SITE FOR RESIDUE JZL B 466
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: BC (A:1-445,B:1-444)
2: CPSASE_1 (A:154-168,B:154-168)
3: CPSASE_2 (A:286-293,B:286-293)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BC
PS50979
Biotin carboxylation domain profile.
ACCC_ECOLI
1-445
2
A:1-445
B:1-444
2
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
ACCC_ECOLI
154-168
2
A:154-168
B:154-168
3
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
ACCC_ECOLI
286-293
2
A:286-293
B:286-293
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3jzia3 (A:331-445)
1b: SCOP_d3jzib3 (B:331-444)
2a: SCOP_d3jzia2 (A:115-330)
2b: SCOP_d3jzib2 (B:115-330)
3a: SCOP_d3jzia1 (A:1-114)
3b: SCOP_d3jzib1 (B:-1-114)
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Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Biotin carboxylase (BC), C-domain
(25)
Escherichia coli [TaxId: 562]
(24)
1a
d3jzia3
A:331-445
1b
d3jzib3
B:331-444
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Biotin carboxylase (BC), domain 2
(25)
Escherichia coli [TaxId: 562]
(24)
2a
d3jzia2
A:115-330
2b
d3jzib2
B:115-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Biotin carboxylase (BC), N-terminal domain
(25)
Escherichia coli [TaxId: 562]
(24)
3a
d3jzia1
A:1-114
3b
d3jzib1
B:-1-114
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (153 KB)
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