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3JZF
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX WITH BENZIMIDAZOLES SERIES
Authors
:
P. Orth
Date
:
23 Sep 09 (Deposition) - 03 Nov 09 (Release) - 14 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Biotin Carboxylase, Accc, Acetyl Coenzyme-A Carboxylase, Accase, Atp-Binding, Biotin, Fatty Acid Biosynthesis, Ligase, Lipid Synthesis, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. C. Cheng, G. W. Shipps, Z. Yang, B. Sun, N. Kawahata, K. A. Soucy, A. Soriano, P. Orth, L. Xiao, P. Mann, T. Black
Discovery And Optimization Of Antibacterial Accc Inhibitors.
Bioorg. Med. Chem. Lett. V. 19 6507 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
2a: 2-[(2-CHLOROBENZYL)AMINO]-1-(CYCLO... (JZKa)
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No.
Name
Count
Type
Full Name
1
CO3
1
Ligand/Ion
CARBONATE ION
2
JZK
1
Ligand/Ion
2-[(2-CHLOROBENZYL)AMINO]-1-(CYCLOHEXYLMETHYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:238 , ARG A:292 , GLN A:294 , VAL A:295 , GLU A:296 , ARG A:338
BINDING SITE FOR RESIDUE CO3 A 466
2
AC2
SOFTWARE
LYS B:116 , LYS B:159 , ALA B:160 , GLY B:164 , GLY B:165 , GLY B:166 , ARG B:167 , GLY B:168 , MET B:169 , TYR B:199 , GLU B:201 , LYS B:202 , TYR B:203 , LEU B:204 , HIS B:209 , HIS B:236 , LEU B:278 , ILE B:287 , GLU B:288
BINDING SITE FOR RESIDUE JZK B 466
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: BC (A:1-445,B:1-445)
2: CPSASE_1 (B:154-168)
3: CPSASE_2 (A:286-293,B:286-293)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BC
PS50979
Biotin carboxylation domain profile.
ACCC_ECOLI
1-445
2
A:1-445
B:1-445
2
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
ACCC_ECOLI
154-168
1
B:154-168
3
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
ACCC_ECOLI
286-293
2
A:286-293
B:286-293
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 5)
Info
All SCOP Domains
1a: SCOP_d3jzfa2 (A:331-449)
1b: SCOP_d3jzfb3 (B:331-445)
2a: SCOP_d3jzfb2 (B:115-330)
3a: SCOP_d3jzfa1 (A:1-114)
3b: SCOP_d3jzfb1 (B:-1-114)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Biotin carboxylase (BC), C-domain
(25)
Escherichia coli [TaxId: 562]
(24)
1a
d3jzfa2
A:331-449
1b
d3jzfb3
B:331-445
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Biotin carboxylase (BC), domain 2
(25)
Escherichia coli [TaxId: 562]
(24)
2a
d3jzfb2
B:115-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Biotin carboxylase (BC), N-terminal domain
(25)
Escherichia coli [TaxId: 562]
(24)
3a
d3jzfa1
A:1-114
3b
d3jzfb1
B:-1-114
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_CPSase_L_D2_3jzfB01 (B:115-324)
1b: PFAM_CPSase_L_D2_3jzfB02 (B:115-324)
2a: PFAM_Biotin_carb_C_3jzfB03 (B:336-441)
2b: PFAM_Biotin_carb_C_3jzfB04 (B:336-441)
3a: PFAM_CPSase_L_chain_3jzfB05 (B:1-110)
3b: PFAM_CPSase_L_chain_3jzfB06 (B:1-110)
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Clan
:
ATP-grasp
(83)
Family
:
CPSase_L_D2
(25)
Escherichia coli (strain K12)
(16)
1a
CPSase_L_D2-3jzfB01
B:115-324
1b
CPSase_L_D2-3jzfB02
B:115-324
Clan
:
no clan defined [family: Biotin_carb_C]
(23)
Family
:
Biotin_carb_C
(23)
Escherichia coli (strain K12)
(14)
2a
Biotin_carb_C-3jzfB03
B:336-441
2b
Biotin_carb_C-3jzfB04
B:336-441
Clan
:
no clan defined [family: CPSase_L_chain]
(25)
Family
:
CPSase_L_chain
(25)
Escherichia coli (strain K12)
(16)
3a
CPSase_L_chain-3jzfB05
B:1-110
3b
CPSase_L_chain-3jzfB06
B:1-110
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Asymmetric Unit 1
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