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3JW0
Biol. Unit 2
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Asym.Unit (199 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
E2~UBIQUITIN-HECT
Authors
:
H. B. Kamadurai, B. A. Schulman
Date
:
17 Sep 09 (Deposition) - 12 Jan 10 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,X,Y
Biol. Unit 1: A,C,X (1x)
Biol. Unit 2: B,D,Y (1x)
Keywords
:
Ubiquitin, Hect, E3, Ubiquitin Ligase, Ubch5B, Nedd4L, Nedd4-2, Ligase, Ubl Conjugation Pathway, Isopeptide Bond, Nucleus, Host- Virus Interaction, Ligase-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. B. Kamadurai, J. Souphron, D. C. Scott, D. M. Duda, D. J. Miller, D. Stringer, R. C. Piper, B. A. Schulman
Insights Into Ubiquitin Transfer Cascades From A Structure Of A Ubch5B Approximately Ubiquitin-Hect(Nedd4L) Complex.
Mol. Cell V. 36 1095 2009
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_077880 (Y659C, chain D, )
2: VAR_077881 (Q674H, chain D, )
3: VAR_077882 (E873K, chain D, )
4: VAR_077883 (R877Q, chain D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_077880
Y
679
C
NED4L_HUMAN
Disease (PVNH7)
879255599
D
Y
659
C
2
UniProt
VAR_077881
Q
694
H
NED4L_HUMAN
Disease (PVNH7)
879255598
D
Q
674
H
3
UniProt
VAR_077882
E
893
K
NED4L_HUMAN
Disease (PVNH7)
879255597
D
E
873
K
4
UniProt
VAR_077883
R
897
Q
NED4L_HUMAN
Disease (PVNH7)
879255596
D
R
877
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 11)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (Y:1-76)
2: UBIQUITIN_CONJUGAT_2 (B:4-136)
3: UBIQUITIN_1 (Y:27-52)
4: UBIQUITIN_CONJUGAT_1 (B:74-89)
5: HECT (D:620-949)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
1
-
Y:1-76
RL40_HUMAN
1-76
1
-
Y:1-76
UBB_HUMAN
1-76
77-152
153-228
1
-
-
-
Y:1-76
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
-
Y:1-76
2
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UB2D2_HUMAN
4-136
1
-
B:4-136
3
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
1
-
Y:27-52
RL40_HUMAN
27-52
1
-
Y:27-52
UBB_HUMAN
27-52
103-128
179-204
1
-
-
-
Y:27-52
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
-
Y:27-52
4
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UB2D2_HUMAN
74-89
1
-
B:74-89
5
HECT
PS50237
HECT domain profile.
NED4L_HUMAN
640-974
1
-
D:620-949
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3jw0x_ (X:)
1b: SCOP_d3jw0y_ (Y:)
2a: SCOP_d3jw0c_ (C:)
2b: SCOP_d3jw0d_ (D:)
3a: SCOP_d3jw0a_ (A:)
3b: SCOP_d3jw0b_ (B:)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d3jw0x_
X:
1b
d3jw0y_
Y:
Fold
:
Hect, E3 ligase catalytic domain
(12)
Superfamily
:
Hect, E3 ligase catalytic domain
(12)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d3jw0c_
C:
2b
d3jw0d_
D:
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubch5b [TaxId: 9606]
(11)
3a
d3jw0a_
A:
3b
d3jw0b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3jw0A00 (A:2-147)
1b: CATH_3jw0B00 (B:2-147)
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin Conjugating Enzyme
(83)
Homologous Superfamily
:
Ubiquitin Conjugating Enzyme
(83)
Human (Homo sapiens)
(49)
1a
3jw0A00
A:2-147
1b
3jw0B00
B:2-147
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_UQ_con_3jw0B01 (B:5-142)
1b: PFAM_UQ_con_3jw0B02 (B:5-142)
2a: PFAM_HECT_3jw0D01 (D:649-949)
2b: PFAM_HECT_3jw0D02 (D:649-949)
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Clans
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)
Organisms
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)
(
)
Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
1a
UQ_con-3jw0B01
B:5-142
1b
UQ_con-3jw0B02
B:5-142
Clan
:
no clan defined [family: HECT]
(8)
Family
:
HECT
(8)
Homo sapiens (Human)
(7)
2a
HECT-3jw0D01
D:649-949
2b
HECT-3jw0D02
D:649-949
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Asymmetric Unit 1
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Asym.Unit (199 KB)
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