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Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROMODOMAIN 1 OF MOUSE BRD4 IN COMPLEX WITH HISTONE H3-K(AC)14
Authors
:
F. Vollmuth, W. Blankenfeldt, M. Geyer
Date
:
17 Sep 09 (Deposition) - 13 Oct 09 (Release) - 05 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Bromodomain, Alpha Helical, N-Acetyl Lysine Recognition, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Vollmuth, W. Blankenfeldt, M. Geyer
Structures Of The Dual Bromodomains Of The P-Tefb-Activating Protein Brd4 At Atomic Resolution
J. Biol. Chem. V. 284 36547 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: N(6)-ACETYLLYSINE (ALYa)
2a: 1,2-ETHANEDIOL (EDOa)
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No.
Name
Count
Type
Full Name
1
ALY
1
Mod. Amino Acid
N(6)-ACETYLLYSINE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:100 , ILE A:101 , LYS A:102 , THR A:103 , ASN A:135
BINDING SITE FOR RESIDUE EDO A 1
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 3)
Info
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1: HISTONE_H3_1 (C:3-4)
2: BROMODOMAIN_2 (A:75-147|-)
3: BROMODOMAIN_1 (A:80-139)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H3_1
PS00322
Histone H3 signature 1.
H33_HUMAN
15-21
1
C:3-4
2
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD4_MOUSE
75-147
369-441
1
A:75-147
-
3
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD4_MOUSE
80-139
1
A:80-139
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Exons
(1, 1)
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Exon 1.3b (C:1-4)
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1: Boundary 1.2c/1.3b
2: Boundary 1.3b/1.4a
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000366816
1
ENSE00001442675
chr1:
226249552-226249795
244
H33_HUMAN
-
0
0
-
-
1.2c
ENST00000366816
2c
ENSE00001442674
chr1:
226250436-226250512
77
H33_HUMAN
-
0
0
-
-
1.3b
ENST00000366816
3b
ENSE00001428176
chr1:
226252030-226252180
151
H33_HUMAN
1-43
43
1
C:1-4
4
1.4a
ENST00000366816
4a
ENSE00001692850
chr1:
226253357-226253510
154
H33_HUMAN
43-94
52
0
-
-
1.5a
ENST00000366816
5a
ENSE00001381318
chr1:
226259052-226259224
173
H33_HUMAN
95-136
42
0
-
-
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Asymmetric Unit 1
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