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3JUU
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PORPHYRANASE B (PORB) FROM ZOBELLIA GALACTANIVORANS
Authors
:
J. H. Hehemann, G. Correc, T. Barbeyron, G. Michel, M. Czjzek
Date
:
15 Sep 09 (Deposition) - 07 Apr 10 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase Family Gh16, Beta-Sandwich Fold, Jelly Roll, Sugar Binding Protein, Hydrolase-Carbohydrate Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Hehemann, G. Correc, T. Barbeyron, W. Helbert, M. Czjzek, G. Michel
Transfer Of Carbohydrate-Active Enzymes From Marine Bacteri To Japanese Gut Microbiota.
Nature V. 464 908 2010
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SO4 A:7 , TRP A:67 , ARG A:70 , TRP A:139 , ILE A:141 , ARG A:252 , GOL A:295 , HOH A:387 , HOH A:410
BINDING SITE FOR RESIDUE MES A 1
02
AC2
SOFTWARE
HIS A:26 , TRP A:282 , ARG A:284 , HOH A:442 , HOH A:443
BINDING SITE FOR RESIDUE SO4 A 4
03
AC3
SOFTWARE
GLY A:52 , LYS A:53 , LYS A:54
BINDING SITE FOR RESIDUE SO4 A 5
04
AC4
SOFTWARE
THR A:90 , THR A:92 , LYS A:273 , ARG A:276 , HOH A:435
BINDING SITE FOR RESIDUE SO4 A 6
05
AC5
SOFTWARE
MES A:1 , ARG A:187 , ASN A:188 , HOH A:482
BINDING SITE FOR RESIDUE SO4 A 7
06
AC6
SOFTWARE
ARG A:70 , THR A:137 , TRP A:139 , GLU A:156 , ASP A:158 , GLU A:161 , GLU A:256 , HOH A:362
BINDING SITE FOR RESIDUE GOL A 294
07
AC7
SOFTWARE
MES A:1 , TRP A:67 , ARG A:70
BINDING SITE FOR RESIDUE GOL A 295
08
AC8
SOFTWARE
SO4 B:8 , TRP B:67 , ARG B:70 , TRP B:139 , ILE B:141 , ARG B:187 , ARG B:252 , GOL B:295 , GOL B:296 , HOH B:442 , HOH B:464
BINDING SITE FOR RESIDUE MES B 1
09
AC9
SOFTWARE
ARG B:187 , ASN B:188 , ILE B:189 , LYS B:197 , HOH B:353
BINDING SITE FOR RESIDUE SO4 B 294
10
BC1
SOFTWARE
ASN A:83 , ASN A:84 , HOH A:342 , GLN B:88 , LYS B:128 , GLU B:274 , THR B:279 , HOH B:366 , HOH B:391 , HOH B:452 , HOH B:487
BINDING SITE FOR RESIDUE SO4 B 2
11
BC2
SOFTWARE
HIS B:26 , TRP B:282 , ARG B:284
BINDING SITE FOR RESIDUE SO4 B 3
12
BC3
SOFTWARE
MES B:1 , ARG B:187 , ASN B:188 , HOH B:483
BINDING SITE FOR RESIDUE SO4 B 8
13
BC4
SOFTWARE
MES B:1 , TRP B:67 , ARG B:70 , THR B:137 , TRP B:139 , GLU B:156 , ASP B:158 , GLU B:161 , GLU B:256
BINDING SITE FOR RESIDUE GOL B 295
14
BC5
SOFTWARE
MES B:1 , TRP B:67 , ARG B:70 , HOH B:306 , HOH B:446
BINDING SITE FOR RESIDUE GOL B 296
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GH16_2 (A:38-290,B:38-291)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH16_2
PS51762
Glycosyl hydrolases family 16 (GH16) domain profile.
PORB_ZOBGA
38-291
2
A:38-290
B:38-291
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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Asym.Unit (105 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
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