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3JUK
Asym. Unit
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Asym.Unit (195 KB)
Biol.Unit 1 (189 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF UDP-GLUCOSE PYROPHOSPHORYLASE COMPLEXED WITH UDP-GLUCOSE
Authors
:
H. Kim, K. K. Kim
Date
:
15 Sep 09 (Deposition) - 31 Mar 10 (Release) - 19 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Udp-Glucose Pyrophosphorylase, Helicobacter Pylori, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Kim, J. Choi, T. Kim, N. K. Lokanath, S. C. Ha, S. W. Suh, H. -Y. Hwang, K. K. Kim
Structural Basis For The Reaction Mechanism Of Udp-Glucose Pyrophosphorylase
Mol. Cells V. 29 397 2010
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
2a: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGa)
2b: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGb)
2c: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGc)
2d: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
12
Ligand/Ion
MAGNESIUM ION
2
UPG
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCOSE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:8 , ALA A:10 , GLY A:11 , LYS A:25 , GLU A:26 , GLN A:102 , MET A:105 , LYS A:106 , GLY A:107 , LEU A:108 , ALA A:111 , LEU A:128 , ASP A:130 , ASP A:131 , TYR A:170 , GLY A:171 , GLU A:190 , LYS A:191 , VAL A:203 , THR A:231 , ARG A:252 , HOH A:291 , HOH A:292 , MG A:301 , HOH A:326 , HOH A:338 , HOH A:340 , HOH A:348 , HOH A:359 , HOH A:369
BINDING SITE FOR RESIDUE UPG A 282
02
AC2
SOFTWARE
LYS A:25 , ASP A:130 , UPG A:282 , HOH A:338 , HOH A:346 , HOH A:359
BINDING SITE FOR RESIDUE MG A 301
03
AC3
SOFTWARE
VAL A:258
BINDING SITE FOR RESIDUE MG A 302
04
AC4
SOFTWARE
THR A:14
BINDING SITE FOR RESIDUE MG A 303
05
AC5
SOFTWARE
PRO B:8 , ALA B:9 , ALA B:10 , GLY B:11 , LYS B:25 , GLU B:26 , GLN B:102 , MET B:105 , LYS B:106 , GLY B:107 , LEU B:108 , ALA B:111 , LEU B:128 , ASP B:130 , ASP B:131 , TYR B:170 , GLY B:171 , GLU B:190 , LYS B:191 , VAL B:203 , THR B:231 , MG B:304 , HOH B:311 , HOH B:314 , HOH B:320 , HOH B:333 , HOH B:360 , HOH B:407 , HOH B:531 , HOH B:558
BINDING SITE FOR RESIDUE UPG B 282
06
AC6
SOFTWARE
ASP B:130 , UPG B:282 , HOH B:354 , HOH B:360 , HOH B:558
BINDING SITE FOR RESIDUE MG B 304
07
AC7
SOFTWARE
ARG A:272 , HOH A:648 , VAL B:258
BINDING SITE FOR RESIDUE MG B 305
08
AC8
SOFTWARE
THR B:14 , ARG B:15
BINDING SITE FOR RESIDUE MG B 306
09
AC9
SOFTWARE
PRO C:8 , ALA C:9 , ALA C:10 , GLY C:11 , LYS C:25 , GLU C:26 , GLN C:102 , MET C:105 , LYS C:106 , GLY C:107 , LEU C:108 , ALA C:111 , LEU C:128 , ASP C:130 , ASP C:131 , TYR C:170 , GLY C:171 , GLU C:190 , LYS C:191 , VAL C:203 , THR C:231 , MG C:307 , HOH C:325 , HOH C:331 , HOH C:352 , HOH C:356 , HOH C:385 , HOH C:430 , HOH C:483
BINDING SITE FOR RESIDUE UPG C 283
10
BC1
SOFTWARE
LYS C:25 , ASP C:130 , UPG C:283 , HOH C:326 , HOH C:356 , HOH C:430
BINDING SITE FOR RESIDUE MG C 307
11
BC2
SOFTWARE
SER C:257 , VAL C:258
BINDING SITE FOR RESIDUE MG C 309
12
BC3
SOFTWARE
PRO D:8 , ALA D:9 , ALA D:10 , GLY D:11 , LYS D:25 , GLU D:26 , GLN D:102 , MET D:105 , LYS D:106 , GLY D:107 , LEU D:108 , ALA D:111 , LEU D:128 , ASP D:130 , ASP D:131 , TYR D:170 , GLY D:171 , GLU D:190 , LYS D:191 , VAL D:203 , THR D:231 , HOH D:300 , MG D:310 , HOH D:316 , HOH D:337 , HOH D:362 , HOH D:367 , HOH D:387 , HOH D:443 , HOH D:559 , HOH D:595
BINDING SITE FOR RESIDUE UPG D 284
13
BC4
SOFTWARE
ASP D:130 , UPG D:284 , HOH D:367 , HOH D:387 , HOH D:559
BINDING SITE FOR RESIDUE MG D 310
14
BC5
SOFTWARE
THR D:14 , ARG D:15
BINDING SITE FOR RESIDUE MG D 311
15
BC6
SOFTWARE
VAL D:258
BINDING SITE FOR RESIDUE MG D 312
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NTP_transferase_3jukD01 (D:6-271)
1b: PFAM_NTP_transferase_3jukD02 (D:6-271)
1c: PFAM_NTP_transferase_3jukD03 (D:6-271)
1d: PFAM_NTP_transferase_3jukD04 (D:6-271)
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)
Clan
:
GT-A
(172)
Family
:
NTP_transferase
(15)
Helicobacter pylori (Campylobacter pylori)
(3)
1a
NTP_transferase-3jukD01
D:6-271
1b
NTP_transferase-3jukD02
D:6-271
1c
NTP_transferase-3jukD03
D:6-271
1d
NTP_transferase-3jukD04
D:6-271
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Asymmetric Unit 1
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Asym.Unit (195 KB)
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