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3JTM
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (263 KB)
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(1)
Title
:
STRUCTURE OF RECOMBINANT FORMATE DEHYDROGENASE FROM ARABIDOPSIS THALIANA
Authors
:
V. I. Timofeev, I. G. Shabalin, A. E. Serov, K. M. Polyakov, V. O. Popov, V. I. Tishkov, I. P. Kuranova, V. R. Samigina
Date
:
13 Sep 09 (Deposition) - 15 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Formate Dehydrogenase, Mitochondrion, Nad, Oxidoreductase, Transit Peptide
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. I. Timofeev, I. G. Shabalin, A. E. Serov, K. M. Polyakov, V. O. Popov, V. I. Tishkov, I. P. Kuranova, V. R. Samigina
Structure Of Recombinant Formate Dehydrogenase From Arabidopsis Thaliana
To Be Published
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
2
Ligand/Ion
AZIDE ION
2
GOL
12
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:354 , PRO A:362 , HOH A:432 , HOH A:580 , HOH A:590 , HOH A:671
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
LYS A:45 , TYR A:184 , ARG A:185
BINDING SITE FOR RESIDUE SO4 A 3
03
AC3
SOFTWARE
TYR A:102 , THR A:104 , LYS A:204 , LEU A:223 , MET A:225 , ALA A:226 , LEU A:229 , HOH A:459 , HOH A:635
BINDING SITE FOR RESIDUE GOL A 4
04
AC4
SOFTWARE
HOH A:7 , VAL A:53 , GLU A:54 , ASN A:55 , ALA A:56 , ARG A:60
BINDING SITE FOR RESIDUE GOL A 5
05
AC5
SOFTWARE
PRO A:97 , PHE A:98 , GLY A:121 , ILE A:122 , ASN A:146 , GLY A:335 , TYR A:344 , HOH A:400 , HOH A:403 , HOH A:622 , HOH A:756
BINDING SITE FOR RESIDUE GOL A 8
06
AC6
SOFTWARE
LEU A:57 , GLY A:58 , LYS A:349 , GOL A:386 , HOH A:437 , HOH A:475 , HOH A:484 , HOH A:492
BINDING SITE FOR RESIDUE GOL A 9
07
AC7
SOFTWARE
ASN A:146 , ASN A:282 , ALA A:283 , HOH A:440 , HOH A:622 , HOH A:717
BINDING SITE FOR RESIDUE GOL A 11
08
AC8
SOFTWARE
ASP A:360
BINDING SITE FOR RESIDUE AZI A 379
09
AC9
SOFTWARE
ARG A:290 , PRO A:312 , PRO A:316 , ASP A:318
BINDING SITE FOR RESIDUE GOL A 380
10
BC1
SOFTWARE
TYR A:187 , ASP A:249
BINDING SITE FOR RESIDUE GOL A 381
11
BC2
SOFTWARE
ILE A:108 , LYS A:109 , ALA A:111 , LYS A:112 , THR A:363 , GLN A:376 , HOH A:505 , HOH A:662 , HOH A:747
BINDING SITE FOR RESIDUE GOL A 382
12
BC3
SOFTWARE
GLY A:123 , SER A:124 , ASP A:125 , GLU A:141 , ILE A:367 , TYR A:377 , HOH A:586
BINDING SITE FOR RESIDUE GOL A 383
13
BC4
SOFTWARE
GLY A:200 , ARG A:201 , GOL A:387
BINDING SITE FOR RESIDUE GOL A 384
14
BC5
SOFTWARE
LEU A:161 , ASN A:164 , GLY A:303 , GLY A:304 , ASN A:326 , HOH A:596
BINDING SITE FOR RESIDUE AZI A 385
15
BC6
SOFTWARE
GOL A:9 , LYS A:349 , HOH A:435
BINDING SITE FOR RESIDUE GOL A 386
16
BC7
SOFTWARE
THR A:104 , ALA A:105 , GLU A:106 , ASP A:128 , GLY A:200 , ASP A:221 , GOL A:384 , HOH A:434 , HOH A:742
BINDING SITE FOR RESIDUE GOL A 387
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_1 (A:194-221)
2: D_2_HYDROXYACID_DH_2 (A:244-266)
3: D_2_HYDROXYACID_DH_3 (A:273-289)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_1
PS00065
D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
FDH_ARATH
200-227
1
A:194-221
2
D_2_HYDROXYACID_DH_2
PS00670
D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
FDH_ARATH
250-272
1
A:244-266
3
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
FDH_ARATH
279-295
1
A:273-289
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_2_Hacid_dh_3jtmA01 (A:56-365)
2a: PFAM_2_Hacid_dh_C_3jtmA02 (A:155-334)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
Form_Glyc_dh
(56)
Family
:
2-Hacid_dh
(21)
Arabidopsis thaliana (Mouse-ear cress)
(2)
1a
2-Hacid_dh-3jtmA01
A:56-365
Clan
:
NADP_Rossmann
(1239)
Family
:
2-Hacid_dh_C
(23)
Arabidopsis thaliana (Mouse-ear cress)
(2)
2a
2-Hacid_dh_C-3jtmA02
A:155-334
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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Show PDB file:
Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (133 KB)
Header - Biol.Unit 1
Biol.Unit 2 (263 KB)
Header - Biol.Unit 2
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