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3JTL
Biol. Unit 1
Info
Asym.Unit (706 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARCHAEAL 20S PROTEASOME IN COMPLEX WITH MUTATED P26 ACTIVATOR
Authors
:
B. M. Stadtmueller, F. G. Whitby, C. P. Hill
Date
:
12 Sep 09 (Deposition) - 03 Nov 09 (Release) - 12 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U (2x)
Keywords
:
20S Proteasome, Pa26, Cytoplasm, Hydrolase, Protease, Proteasome, Threonine Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Stadtmueller, K. Ferrell, F. G. Whitby, A. Heroux, H. Robinson, D. G. Myszka, C. P. Hill
Structural Models For Interactions Between The 20S Proteasome And Its Pan/19S Activators.
J. Biol. Chem. V. 285 13 2010
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 42)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_ALPHA_1 (A:8-30,B:8-30,C:8-30,D:8-30,E:8-30...)
2: PROTEASOME_BETA_1 (H:4-51,I:4-51,J:4-51,K:4-51,L:4-51...)
3: PROTEASOME_ALPHA_2 (A:23-233,B:23-233,C:23-233,D:23-23...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA_THEAC
8-30
14
A:8-30
B:8-30
C:8-30
D:8-30
E:8-30
F:8-30
G:8-30
2
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB_THEAC
12-59
14
H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
3
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA_THEAC
23-233
14
A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
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Exons
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SCOP Domains
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CATH Domains
(2, 21)
Info
all CATH domains
1a: CATH_3jtlA00 (A:7-233)
1b: CATH_3jtlB00 (B:7-233)
1c: CATH_3jtlC00 (C:7-233)
1d: CATH_3jtlD00 (D:7-233)
1e: CATH_3jtlE00 (E:7-233)
1f: CATH_3jtlF00 (F:7-233)
1g: CATH_3jtlG00 (G:7-233)
1h: CATH_3jtlH00 (H:1-203)
1i: CATH_3jtlI00 (I:1-203)
1j: CATH_3jtlJ00 (J:1-203)
1k: CATH_3jtlK00 (K:1-203)
1l: CATH_3jtlL00 (L:1-203)
1m: CATH_3jtlM00 (M:1-203)
1n: CATH_3jtlN00 (N:1-203)
2a: CATH_3jtlO01 (O:4-221)
2b: CATH_3jtlP01 (P:4-221)
2c: CATH_3jtlQ01 (Q:4-221)
2d: CATH_3jtlR01 (R:4-221)
2e: CATH_3jtlS01 (S:4-221)
2f: CATH_3jtlT01 (T:4-221)
2g: CATH_3jtlU01 (U:4-221)
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(
)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Thermoplasma acidophilum. Organism_taxid: 2303.
(6)
1a
3jtlA00
A:7-233
1b
3jtlB00
B:7-233
1c
3jtlC00
C:7-233
1d
3jtlD00
D:7-233
1e
3jtlE00
E:7-233
1f
3jtlF00
F:7-233
1g
3jtlG00
G:7-233
1h
3jtlH00
H:1-203
1i
3jtlI00
I:1-203
1j
3jtlJ00
J:1-203
1k
3jtlK00
K:1-203
1l
3jtlL00
L:1-203
1m
3jtlM00
M:1-203
1n
3jtlN00
N:1-203
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.180, no name defined]
(10)
Thermoplasma acidophilum. Organism_taxid: 2303.
(5)
2a
3jtlO01
O:4-221
2b
3jtlP01
P:4-221
2c
3jtlQ01
Q:4-221
2d
3jtlR01
R:4-221
2e
3jtlS01
S:4-221
2f
3jtlT01
T:4-221
2g
3jtlU01
U:4-221
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Pfam Domains
(2, 21)
Info
all PFAM domains
1a: PFAM_Proteasome_3jtlG01 (G:31-216)
1b: PFAM_Proteasome_3jtlG02 (G:31-216)
1c: PFAM_Proteasome_3jtlG03 (G:31-216)
1d: PFAM_Proteasome_3jtlG04 (G:31-216)
1e: PFAM_Proteasome_3jtlG05 (G:31-216)
1f: PFAM_Proteasome_3jtlG06 (G:31-216)
1g: PFAM_Proteasome_3jtlG07 (G:31-216)
1h: PFAM_Proteasome_3jtlN01 (N:1-178)
1i: PFAM_Proteasome_3jtlN02 (N:1-178)
1j: PFAM_Proteasome_3jtlN03 (N:1-178)
1k: PFAM_Proteasome_3jtlN04 (N:1-178)
1l: PFAM_Proteasome_3jtlN05 (N:1-178)
1m: PFAM_Proteasome_3jtlN06 (N:1-178)
1n: PFAM_Proteasome_3jtlN07 (N:1-178)
2a: PFAM_Proteasome_A_N_3jtlG08 (G:8-30)
2b: PFAM_Proteasome_A_N_3jtlG09 (G:8-30)
2c: PFAM_Proteasome_A_N_3jtlG10 (G:8-30)
2d: PFAM_Proteasome_A_N_3jtlG11 (G:8-30)
2e: PFAM_Proteasome_A_N_3jtlG12 (G:8-30)
2f: PFAM_Proteasome_A_N_3jtlG13 (G:8-30)
2g: PFAM_Proteasome_A_N_3jtlG14 (G:8-30)
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Clans
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
1a
Proteasome-3jtlG01
G:31-216
1b
Proteasome-3jtlG02
G:31-216
1c
Proteasome-3jtlG03
G:31-216
1d
Proteasome-3jtlG04
G:31-216
1e
Proteasome-3jtlG05
G:31-216
1f
Proteasome-3jtlG06
G:31-216
1g
Proteasome-3jtlG07
G:31-216
1h
Proteasome-3jtlN01
N:1-178
1i
Proteasome-3jtlN02
N:1-178
1j
Proteasome-3jtlN03
N:1-178
1k
Proteasome-3jtlN04
N:1-178
1l
Proteasome-3jtlN05
N:1-178
1m
Proteasome-3jtlN06
N:1-178
1n
Proteasome-3jtlN07
N:1-178
Clan
:
no clan defined [family: Proteasome_A_N]
(20)
Family
:
Proteasome_A_N
(20)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
2a
Proteasome_A_N-3jtlG08
G:8-30
2b
Proteasome_A_N-3jtlG09
G:8-30
2c
Proteasome_A_N-3jtlG10
G:8-30
2d
Proteasome_A_N-3jtlG11
G:8-30
2e
Proteasome_A_N-3jtlG12
G:8-30
2f
Proteasome_A_N-3jtlG13
G:8-30
2g
Proteasome_A_N-3jtlG14
G:8-30
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