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Asym. Unit
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Asym.Unit (702 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARCHAEAL 20S PROTEASOME IN COMPLEX WITH MUTATED P26 ACTIVATOR
Authors
:
B. M. Stadtmueller, F. G. Whitby, C. P. Hill
Date
:
10 Sep 09 (Deposition) - 03 Nov 09 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U (2x)
Keywords
:
20S Proteasome, Pa26, Proteasome Activation, Cytoplasm, Hydrolase, Protease, Proteasome, Threonine Protease, Hydrolase/Hydrolase Activator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Stadtmueller, K. Ferrell, F. G. Whitby, A. Heroux, H. Robinson, D. G. Myszka, C. P. Hill
Structural Models For Interactions Between The 20S Proteasome And Its Pan/19S Activators.
J. Biol. Chem. V. 285 13 2010
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 21)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_ALPHA_1 (A:8-30,B:8-30,C:8-30,D:8-30,E:8-30...)
2: PROTEASOME_BETA_1 (H:4-51,I:4-51,J:4-51,K:4-51,L:4-51...)
3: PROTEASOME_ALPHA_2 (A:23-233,B:23-233,C:23-233,D:23-23...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA_THEAC
8-30
7
A:8-30
B:8-30
C:8-30
D:8-30
E:8-30
F:8-30
G:8-30
2
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB_THEAC
12-59
7
H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
3
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA_THEAC
23-233
7
A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 21)
Info
All SCOP Domains
1a: SCOP_d3jseo_ (O:)
1b: SCOP_d3jsep_ (P:)
1c: SCOP_d3jseq_ (Q:)
1d: SCOP_d3jser_ (R:)
1e: SCOP_d3jses_ (S:)
1f: SCOP_d3jset_ (T:)
1g: SCOP_d3jseu_ (U:)
2a: SCOP_d3jsea_ (A:)
2b: SCOP_d3jseb_ (B:)
2c: SCOP_d3jsec_ (C:)
2d: SCOP_d3jsed_ (D:)
2e: SCOP_d3jsee_ (E:)
2f: SCOP_d3jsef_ (F:)
2g: SCOP_d3jseg_ (G:)
3a: SCOP_d3jseh_ (H:)
3b: SCOP_d3jsek_ (K:)
3c: SCOP_d3jsel_ (L:)
3d: SCOP_d3jsem_ (M:)
3e: SCOP_d3jsen_ (N:)
3f: SCOP_d3jsei_ (I:)
3g: SCOP_d3jsej_ (J:)
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)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Proteasome activator
(7)
Family
:
Proteasome activator
(7)
Protein domain
:
automated matches
(5)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(5)
1a
d3jseo_
O:
1b
d3jsep_
P:
1c
d3jseq_
Q:
1d
d3jser_
R:
1e
d3jses_
S:
1f
d3jset_
T:
1g
d3jseu_
U:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Thermoplasma acidophilum [TaxId: 2303]
(7)
2a
d3jsea_
A:
2b
d3jseb_
B:
2c
d3jsec_
C:
2d
d3jsed_
D:
2e
d3jsee_
E:
2f
d3jsef_
F:
2g
d3jseg_
G:
Protein domain
:
Proteasome beta subunit (catalytic)
(61)
Thermoplasma acidophilum [TaxId: 2303]
(5)
3a
d3jseh_
H:
3b
d3jsek_
K:
3c
d3jsel_
L:
3d
d3jsem_
M:
3e
d3jsen_
N:
3f
d3jsei_
I:
3g
d3jsej_
J:
[
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CATH Domains
(2, 21)
Info
all CATH domains
1a: CATH_3jseA00 (A:7-233)
1b: CATH_3jseB00 (B:7-233)
1c: CATH_3jseC00 (C:7-233)
1d: CATH_3jseD00 (D:7-233)
1e: CATH_3jseH00 (H:1-203)
1f: CATH_3jseI00 (I:1-203)
1g: CATH_3jseJ00 (J:1-203)
1h: CATH_3jseK00 (K:1-203)
1i: CATH_3jseL00 (L:1-203)
1j: CATH_3jseE00 (E:7-233)
1k: CATH_3jseM00 (M:1-203)
1l: CATH_3jseN00 (N:1-203)
1m: CATH_3jseF00 (F:7-233)
1n: CATH_3jseG00 (G:7-233)
2a: CATH_3jseO01 (O:4-221)
2b: CATH_3jseR01 (R:4-221)
2c: CATH_3jseS01 (S:4-221)
2d: CATH_3jseT01 (T:4-221)
2e: CATH_3jseU01 (U:4-221)
2f: CATH_3jseP01 (P:4-221)
2g: CATH_3jseQ01 (Q:4-221)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
1a
3jseA00
A:7-233
1b
3jseB00
B:7-233
1c
3jseC00
C:7-233
1d
3jseD00
D:7-233
1e
3jseH00
H:1-203
1f
3jseI00
I:1-203
1g
3jseJ00
J:1-203
1h
3jseK00
K:1-203
1i
3jseL00
L:1-203
1j
3jseE00
E:7-233
1k
3jseM00
M:1-203
1l
3jseN00
N:1-203
1m
3jseF00
F:7-233
1n
3jseG00
G:7-233
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.180, no name defined]
(10)
Thermoplasma acidophilum. Organism_taxid: 2303.
(2)
2a
3jseO01
O:4-221
2b
3jseR01
R:4-221
2c
3jseS01
S:4-221
2d
3jseT01
T:4-221
2e
3jseU01
U:4-221
2f
3jseP01
P:4-221
2g
3jseQ01
Q:4-221
[
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Pfam Domains
(2, 21)
Info
all PFAM domains
1a: PFAM_Proteasome_3jseG01 (G:31-216)
1b: PFAM_Proteasome_3jseG02 (G:31-216)
1c: PFAM_Proteasome_3jseG03 (G:31-216)
1d: PFAM_Proteasome_3jseG04 (G:31-216)
1e: PFAM_Proteasome_3jseG05 (G:31-216)
1f: PFAM_Proteasome_3jseG06 (G:31-216)
1g: PFAM_Proteasome_3jseG07 (G:31-216)
1h: PFAM_Proteasome_3jseN01 (N:1-178)
1i: PFAM_Proteasome_3jseN02 (N:1-178)
1j: PFAM_Proteasome_3jseN03 (N:1-178)
1k: PFAM_Proteasome_3jseN04 (N:1-178)
1l: PFAM_Proteasome_3jseN05 (N:1-178)
1m: PFAM_Proteasome_3jseN06 (N:1-178)
1n: PFAM_Proteasome_3jseN07 (N:1-178)
2a: PFAM_Proteasome_A_N_3jseG08 (G:8-30)
2b: PFAM_Proteasome_A_N_3jseG09 (G:8-30)
2c: PFAM_Proteasome_A_N_3jseG10 (G:8-30)
2d: PFAM_Proteasome_A_N_3jseG11 (G:8-30)
2e: PFAM_Proteasome_A_N_3jseG12 (G:8-30)
2f: PFAM_Proteasome_A_N_3jseG13 (G:8-30)
2g: PFAM_Proteasome_A_N_3jseG14 (G:8-30)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
1a
Proteasome-3jseG01
G:31-216
1b
Proteasome-3jseG02
G:31-216
1c
Proteasome-3jseG03
G:31-216
1d
Proteasome-3jseG04
G:31-216
1e
Proteasome-3jseG05
G:31-216
1f
Proteasome-3jseG06
G:31-216
1g
Proteasome-3jseG07
G:31-216
1h
Proteasome-3jseN01
N:1-178
1i
Proteasome-3jseN02
N:1-178
1j
Proteasome-3jseN03
N:1-178
1k
Proteasome-3jseN04
N:1-178
1l
Proteasome-3jseN05
N:1-178
1m
Proteasome-3jseN06
N:1-178
1n
Proteasome-3jseN07
N:1-178
Clan
:
no clan defined [family: Proteasome_A_N]
(20)
Family
:
Proteasome_A_N
(20)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(8)
2a
Proteasome_A_N-3jseG08
G:8-30
2b
Proteasome_A_N-3jseG09
G:8-30
2c
Proteasome_A_N-3jseG10
G:8-30
2d
Proteasome_A_N-3jseG11
G:8-30
2e
Proteasome_A_N-3jseG12
G:8-30
2f
Proteasome_A_N-3jseG13
G:8-30
2g
Proteasome_A_N-3jseG14
G:8-30
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