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3JQ1
Asym. Unit
Info
Asym.Unit (198 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (YP_001297730.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.55 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
04 Sep 09 (Deposition) - 22 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Yp_001297730. 1, Susd Superfamily Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ragb, Susd And Hypothetical Proteins, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Yp_001297730. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 5 A Resolution
To Be Published
[
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Hetero Components
(4, 38)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
11
Ligand/Ion
CALCIUM ION
2
CL
11
Ligand/Ion
CHLORIDE ION
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:471 , HOH A:520 , HOH A:563 , HOH A:701 , HOH A:703 , HOH A:882 , HOH A:959
BINDING SITE FOR RESIDUE CA A 2
02
AC2
SOFTWARE
LEU A:200 , GLN A:211 , HOH A:824 , HOH A:868 , HOH A:869 , HOH A:1136 , HOH A:1286
BINDING SITE FOR RESIDUE CA A 5
03
AC3
SOFTWARE
SER A:102 , HOH A:559 , HOH A:630 , HOH A:712 , HOH A:735 , HOH A:1126 , HOH A:1131 , HOH A:1295
BINDING SITE FOR RESIDUE CA A 6
04
AC4
SOFTWARE
ASP A:257 , GLU A:260 , PHE A:384 , HOH A:553 , HOH A:562 , HOH B:558
BINDING SITE FOR RESIDUE CA A 7
05
AC5
SOFTWARE
THR A:91 , ASN A:97 , SER A:98 , ASN A:101 , HOH A:825 , HOH A:879
BINDING SITE FOR RESIDUE CL A 12
06
AC6
SOFTWARE
CL A:20 , ASN A:261 , ILE B:206 , HOH B:1017
BINDING SITE FOR RESIDUE CL A 14
07
AC7
SOFTWARE
GLY A:463 , LEU A:465 , GLU A:466
BINDING SITE FOR RESIDUE CL A 17
08
AC8
SOFTWARE
GLN A:229 , LYS A:406 , HOH B:840 , HOH B:1033
BINDING SITE FOR RESIDUE CL A 19
09
AC9
SOFTWARE
CL A:14 , ILE A:206 , HOH A:673 , ASN B:261
BINDING SITE FOR RESIDUE CL A 20
10
BC1
SOFTWARE
ARG A:94 , ASN A:479
BINDING SITE FOR RESIDUE CL A 21
11
BC2
SOFTWARE
THR A:362 , TYR A:363 , HOH A:880 , HOH A:1179
BINDING SITE FOR RESIDUE CL A 22
12
BC3
SOFTWARE
TYR A:112 , ARG A:165 , GLU A:500 , HOH A:676 , HOH A:1234
BINDING SITE FOR RESIDUE EDO A 23
13
BC4
SOFTWARE
GLU A:249 , TYR A:331 , HOH A:1350
BINDING SITE FOR RESIDUE EDO A 25
14
BC5
SOFTWARE
HOH A:515 , ASP B:257 , GLU B:260 , PHE B:384 , HOH B:514 , HOH B:585
BINDING SITE FOR RESIDUE CA B 1
15
BC6
SOFTWARE
EDO B:26 , GLU B:466 , HOH B:767 , HOH B:828 , HOH B:841 , HOH B:869 , HOH B:881
BINDING SITE FOR RESIDUE CA B 3
16
BC7
SOFTWARE
LEU B:200 , GLN B:211 , HOH B:590 , HOH B:694 , HOH B:958 , HOH B:983 , HOH B:1236
BINDING SITE FOR RESIDUE CA B 4
17
BC8
SOFTWARE
SER B:102 , HOH B:653 , HOH B:718 , HOH B:777 , HOH B:803 , HOH B:940 , HOH B:1133 , HOH B:1140
BINDING SITE FOR RESIDUE CA B 8
18
BC9
SOFTWARE
HOH B:550 , HOH B:804 , HOH B:824 , HOH B:849 , HOH B:926 , HOH B:1045 , HOH B:1071
BINDING SITE FOR RESIDUE CA B 9
19
CC1
SOFTWARE
GLY B:327 , ASP B:486 , HOH B:928 , HOH B:1108 , HOH B:1164 , HOH B:1377
BINDING SITE FOR RESIDUE CA B 10
20
CC2
SOFTWARE
THR B:471 , HOH B:769 , HOH B:1279 , HOH B:1306 , HOH B:1471
BINDING SITE FOR RESIDUE CA B 11
21
CC3
SOFTWARE
GLY B:463 , LEU B:465 , GLU B:466
BINDING SITE FOR RESIDUE CL B 13
22
CC4
SOFTWARE
THR B:91 , ASN B:97 , SER B:98 , ASN B:101 , HOH B:705 , HOH B:761 , HOH B:951
BINDING SITE FOR RESIDUE CL B 15
23
CC5
SOFTWARE
THR B:362 , TYR B:363 , HOH B:692 , HOH B:1190
BINDING SITE FOR RESIDUE CL B 16
24
CC6
SOFTWARE
ARG B:94 , ASN B:479 , HOH B:1269
BINDING SITE FOR RESIDUE CL B 18
25
CC7
SOFTWARE
GLU B:249 , HOH B:1396
BINDING SITE FOR RESIDUE EDO B 24
26
CC8
SOFTWARE
CA B:3 , GLU B:466 , ASP B:486 , ASN B:487 , HOH B:696 , HOH B:767 , HOH B:869 , HOH B:881 , HOH B:955
BINDING SITE FOR RESIDUE EDO B 26
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SusD_3jq1B01 (B:263-513)
1b: PFAM_SusD_3jq1B02 (B:263-513)
2a: PFAM_SusD_like_3_3jq1B03 (B:37-223)
2b: PFAM_SusD_like_3_3jq1B04 (B:37-223)
View:
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
SusD
(11)
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
(6)
1a
SusD-3jq1B01
B:263-513
1b
SusD-3jq1B02
B:263-513
Family
:
SusD-like_3
(11)
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
(6)
2a
SusD-like_3-3jq1B03
B:37-223
2b
SusD-like_3-3jq1B04
B:37-223
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