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3JPZ
Asym. Unit
Info
Asym.Unit (373 KB)
Biol.Unit 1 (368 KB)
Biol.Unit 2 (187 KB)
Biol.Unit 3 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LOMBRICINE KINASE
Authors
:
D. J. Bush, O. Kirillova, S. A. Clark, F. Fabiola, T. Somasundaram, M. S.
Date
:
04 Sep 09 (Deposition) - 15 Sep 10 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Mixed Alpha / Beta, Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Bush, O. Kirillova, S. A. Clark, O. Davulcu, F. Fabiola, Q. Xie, T. Somasundaram, W. R. Ellington, M. S. Chapman
The Structure Of Lombricine Kinase: Implications For Phosphagen Kinase Conformational Changes.
J. Biol. Chem. V. 286 9338 2011
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: NITRATE ION (NO3a)
1b: NITRATE ION (NO3b)
1c: NITRATE ION (NO3c)
1d: NITRATE ION (NO3d)
1e: NITRATE ION (NO3e)
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No.
Name
Count
Type
Full Name
1
NO3
5
Ligand/Ion
NITRATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:53 , ASN A:54 , HIS A:187 , ASN A:191
BINDING SITE FOR RESIDUE NO3 A 658
2
AC2
SOFTWARE
PRO A:50 , ASN A:54 , CYS A:58 , GLY A:60 , HIS A:187 , LEU A:188 , HOH A:498 , HOH A:502
BINDING SITE FOR RESIDUE NO3 A 659
3
AC3
SOFTWARE
SER B:153 , ARG B:242
BINDING SITE FOR RESIDUE NO3 B 655
4
AC4
SOFTWARE
ASN B:54 , CYS B:58 , HIS B:187 , LEU B:188 , HOH B:407 , HOH B:456 , HOH B:581 , HOH B:629
BINDING SITE FOR RESIDUE NO3 B 656
5
AC5
SOFTWARE
ASP B:53 , ASN B:54 , HIS B:187 , ASN B:191
BINDING SITE FOR RESIDUE NO3 B 657
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3jpza1 (A:3-89)
1b: SCOP_d3jpzb1 (B:3-89)
2a: SCOP_d3jpza2 (A:90-366)
2b: SCOP_d3jpzb2 (B:90-364)
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Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Innkeeper worm (Urechis caupo) [TaxId: 6431]
(2)
1a
d3jpza1
A:3-89
1b
d3jpzb1
B:3-89
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Innkeeper worm (Urechis caupo) [TaxId: 6431]
(2)
2a
d3jpza2
A:90-366
2b
d3jpzb2
B:90-364
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ATP_gua_Ptrans_3jpzB01 (B:107-354)
1b: PFAM_ATP_gua_Ptrans_3jpzB02 (B:107-354)
2a: PFAM_ATP_gua_PtransN_3jpzB03 (B:12-87)
2b: PFAM_ATP_gua_PtransN_3jpzB04 (B:12-87)
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Clan
:
GCS
(23)
Family
:
ATP-gua_Ptrans
(14)
Urechis caupo (Innkeeper worm) (Spoonworm)
(2)
1a
ATP-gua_Ptrans-3jpzB01
B:107-354
1b
ATP-gua_Ptrans-3jpzB02
B:107-354
Clan
:
no clan defined [family: ATP-gua_PtransN]
(14)
Family
:
ATP-gua_PtransN
(14)
Urechis caupo (Innkeeper worm) (Spoonworm)
(2)
2a
ATP-gua_PtransN-3jpzB03
B:12-87
2b
ATP-gua_PtransN-3jpzB04
B:12-87
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Show PDB file:
Asym.Unit (373 KB)
Header - Asym.Unit
Biol.Unit 1 (368 KB)
Header - Biol.Unit 1
Biol.Unit 2 (187 KB)
Header - Biol.Unit 2
Biol.Unit 3 (184 KB)
Header - Biol.Unit 3
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