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Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
EED: A NOVEL HISTONE TRIMETHYLLYSINE BINDER WITHIN THE EED-EZH2 POLYCOMB COMPLEX
Authors
:
C. Xu, C. B. Bian, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards A. Bochkarev, J. Min, Structural Genomics Consortium (Sgc)
Date
:
04 Sep 09 (Deposition) - 20 Oct 09 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Histone Binding, Structural Genomics, Sgc, Structural Genomics Consortium, Alternative Initiation, Chromatin Regulator, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription Regulation, Wd Repeat, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Xu, C. Bian, W. Yang, M. Galka, H. Ouyang, C. Chen, W. Qiu, H. Liu, A. E. Jones, F. Mackenzie, P. Pan, S. S. Li, H. Wang, J. Min
Binding Of Different Histone Marks Differentially Regulates The Activity And Specificity Of Polycomb Repressive Complex 2 (Prc2).
Proc. Natl. Acad. Sci. Usa V. 107 19266 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-TRIMETHYLLYSINE (M3La)
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Label:
No.
Name
Count
Type
Full Name
1
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_079255 (N194S, chain A, )
2: VAR_079256 (R236G, chain A, )
3: VAR_078316 (R236T, chain A, )
4: VAR_079257 (H258Y, chain A, )
5: VAR_079258 (R302G, chain A, )
6: VAR_078317 (R302S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_079255
N
194
S
EED_HUMAN
---
---
A
N
194
S
2
UniProt
VAR_079256
R
236
G
EED_HUMAN
---
---
A
R
236
G
3
UniProt
VAR_078316
R
236
T
EED_HUMAN
Unclassified
---
A
R
236
T
4
UniProt
VAR_079257
H
258
Y
EED_HUMAN
---
---
A
H
258
Y
5
UniProt
VAR_079258
R
302
G
EED_HUMAN
---
---
A
R
302
G
6
UniProt
VAR_078317
R
302
S
EED_HUMAN
Unclassified
---
A
R
302
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
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All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (A:206-220)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
EED_HUMAN
206-220
1
A:206-220
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Exons
(1, 1)
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Exon 1.1 (B:18-23)
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1: Boundary -/1.1
2: Boundary 1.1/-
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000377803
1
ENSE00001475159
chr6:
26104104-26104518
415
H4_HUMAN
1-127
127
1
B:18-23
6
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_WD40_3jpxA01 (A:231-264)
1b: PFAM_WD40_3jpxA02 (A:231-264)
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Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Homo sapiens (Human)
(18)
1a
WD40-3jpxA01
A:231-264
1b
WD40-3jpxA02
A:231-264
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