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3JD8
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (210 KB)
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(1)
Title
:
CRYO-EM STRUCTURE OF THE FULL-LENGTH HUMAN NPC1 AT 4.4 ANGSTROM
Authors
:
X. Gong, H. W. Qian, X. H. Zhou, J. P. Wu, Q. Zhou, N. Yan
Date
:
01 May 16 (Deposition) - 01 Jun 16 (Release) - 08 Jun 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.43
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Gong, H. W. Qiang, X. H. Zhou, J. P. Wu, Q. Zhou, N. Yan
The Structure Of Niemann-Pick C1 Protein
To Be Published
[
close entry info
]
Hetero Components
(4, 25)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CHOLESTEROL (CLRa)
3a: ALPHA-D-MANNOSE (MANa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CLR
1
Ligand/Ion
CHOLESTEROL
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:65 , CYS A:109 , GLU A:110 , ASN A:222 , NAG A:1302
BINDING SITE FOR RESIDUE NAG A 1301
02
AC2
SOFTWARE
GLY A:65 , PHE A:68 , NAG A:1301
BINDING SITE FOR RESIDUE NAG A 1302
03
AC3
SOFTWARE
ASN A:158 , SER A:244
BINDING SITE FOR RESIDUE NAG A 1303
04
AC4
SOFTWARE
ASN A:524 , NAG A:1305
BINDING SITE FOR RESIDUE NAG A 1304
05
AC5
SOFTWARE
GLN A:88 , NAG A:1304
BINDING SITE FOR RESIDUE NAG A 1305
06
AC6
SOFTWARE
LYS A:417 , ASP A:551 , ASN A:554 , ASN A:557 , NAG A:1307
BINDING SITE FOR RESIDUE NAG A 1306
07
AC7
SOFTWARE
NAG A:1306 , BMA A:1308
BINDING SITE FOR RESIDUE NAG A 1307
08
AC8
SOFTWARE
ASP A:428 , NAG A:1307
BINDING SITE FOR RESIDUE BMA A 1308
09
AC9
SOFTWARE
TYR A:571 , ASN A:572
BINDING SITE FOR RESIDUE NAG A 1309
10
BC1
SOFTWARE
ASN A:598 , NAG A:1311
BINDING SITE FOR RESIDUE NAG A 1310
11
BC2
SOFTWARE
NAG A:1310
BINDING SITE FOR RESIDUE NAG A 1311
12
BC3
SOFTWARE
TYR A:475 , ASN A:476 , ASN A:478 , NAG A:1313
BINDING SITE FOR RESIDUE NAG A 1312
13
BC4
SOFTWARE
NAG A:1312 , BMA A:1314 , MAN A:1315
BINDING SITE FOR RESIDUE NAG A 1313
14
BC5
SOFTWARE
NAG A:1313 , MAN A:1315
BINDING SITE FOR RESIDUE BMA A 1314
15
BC6
SOFTWARE
NAG A:1313 , BMA A:1314
BINDING SITE FOR RESIDUE MAN A 1315
16
BC7
SOFTWARE
ASN A:122 , MET A:217
BINDING SITE FOR RESIDUE NAG A 1316
17
BC8
SOFTWARE
ASN A:70
BINDING SITE FOR RESIDUE NAG A 1317
18
BC9
SOFTWARE
NAG A:1319
BINDING SITE FOR RESIDUE NAG A 1318
19
CC1
SOFTWARE
ALA A:183 , ASN A:185 , THR A:187 , ASN A:188 , NAG A:1318
BINDING SITE FOR RESIDUE NAG A 1319
20
CC2
SOFTWARE
ASN A:1064
BINDING SITE FOR RESIDUE NAG A 1320
21
CC3
SOFTWARE
ASN A:1072
BINDING SITE FOR RESIDUE NAG A 1321
22
CC4
SOFTWARE
ASN A:135
BINDING SITE FOR RESIDUE NAG A 1322
23
CC5
SOFTWARE
ASN A:452
BINDING SITE FOR RESIDUE NAG A 1323
24
CC6
SOFTWARE
ASN A:459
BINDING SITE FOR RESIDUE NAG A 1324
25
CC7
SOFTWARE
ASN A:41 , GLN A:79 , ASN A:86 , PHE A:108 , LEU A:111 , THR A:112 , LEU A:176 , TYR A:192 , MET A:193 , PRO A:202 , PHE A:203
BINDING SITE FOR RESIDUE CLR A 1325
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (222 KB)
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